>PF11231 (255 residues) TGGVSQLEGAAGGGLTPWAVIGGYGTRDEIGANAFYTRVNLPDYHVDTAGAMVGLYNRVE LSFARQRFDTEKVGAALGLGEGFTFRQDVVGVKVRLFGDVVLDQGSWLPQVSVGAQYKKN DQDGVVRFVGAKRSQGTDYYISATKLFLGQSLLVDGTVRFTKANQIGILGFGGDLNNSYK PEFEASVAYLLSRHWAIGAEYRQKPNNLGIAREDDWYDAFVAWAPSKHVSLTVAYADLGN IVIKDRQRGLYASVQ |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | TGGVSQLEGAAGGGLTPWAVIGGYGTRDEIGANAFYTRVNLPDYHVDTAGAMVGLYNRVELSFARQRFDTEKVGAALGLGEGFTFRQDVVGVKVRLFGDVVLDQGSWLPQVSVGAQYKKNDQDGVVRFVGAKRSQGTDYYISATKLFLGQSLLVDGTVRFTKANQIGILGFGGDLNNSYKPEFEASVAYLLSRHWAIGAEYRQKPNNLGIAREDDWYDAFVAWAPSKHVSLTVAYADLGNIVIKDRQRGLYASVQ | |||||||||||||||||||
1 | 3a71A | 0.08 | 0.06 | 2.48 | 1.28 | CNFpred | -----------------------------VPRTLYPRNEQLPNGDLLATWENYSP-PAVYFPIYRSKDHGWNEISRVHDT---NGYGLRYQPFLYSLPERVG---KKGTLLLAGSSIPTDLSSTDIVLYASQD-WDFVSHIAAGGE-NGLTPVWEPFLLANKGKLICYYSDQRD-----NATYGQTMVHQVTGPVVEDVTYP-----------YTDRPGMPVVTKLPNGQYFYVYEYGSFFGTETYSFPLYYRLS | |||||||||||||
2 | 4rl8A | 0.09 | 0.08 | 3.13 | 1.01 | HHsearch-2 | -------------EVDPGDYEALPVGATIGVVYYQHSTTDSSDFKILRLLHVYQLTLTLEPQFLLPFGRVSSSGDASALGDTSGVGDLTLTAPLKYRLN---E---ANDILGATVYLTAPTGNYRDDNLGE-NRWKVDLQAAYVKHLGKWAVDLVGDAIWYSDNDD----FGSRREQDVSYGAQLMGRYIVDPGTSLAIGLGHTWNQIDDRAETTNFRVTANKFFTAKDQLQMQLGRDLAVENGPKENRLNLRYV | |||||||||||||
3 | 4rl8A | 0.08 | 0.08 | 3.07 | 1.30 | Neff-PPAS | -------EVDPGDYEALATIGVVYYQHSTTDSAYANGHKVSSDFKLTSNVGILRLLLTLEPQFLLPFGRVSSSGDASALGDTSGVGDLTLTAPLKYRL----NEANDILGATVYLTAPTGNYNRDDALNLGENRWKVDLQAAYVKHLEKWAVDLVGDAIWYSDNDDFGSSSARREQDV-SYGAQLMGRYIVDPGTSLAIGLGHDGTAQDDRAETTNFRVTANKFFTAKDQLQMQLGRDLAVNGPKENFRLNLRYV | |||||||||||||
4 | 3a71A | 0.10 | 0.09 | 3.45 | 0.91 | SPARKS-K | ------------PTSLTNVTIFSPPSDYIVPRTLYPRNEQLPNGDLLATWENYSPEPAVYFPIYRSKDHGKTISRHDTVNGYGLRYQPFLYSTLLLAGSSIPTDLSS---TDIVLYASQDDGMTIAAGGEARPNNGLTPVWEPFLLANKGKLICYYSDQRDNATYGQTMVHQVTYPTYTDRPGMPVVTKLPNGQYFYVYEYGSFFGTETYSFPENISSPYAVWTPYGNGTIIVSSG---------TQGTLFINKA | |||||||||||||
5 | 2wjqA | 0.13 | 0.09 | 3.27 | 0.72 | FFAS-3D | --------------------------------DVRGGYRSGSHAYETRLKVSEGWQNGWWASMESNTWNTIN------------------DVQVEVNYAIKLDDQ---WTVRPGMLTHFSSNGTRY-----------GPYVKLSWDA-TKDLNFGIRYRYDWKAYRQ-QDLSGDMSRDNVHRWDGYVTYHINSDFTFAWQLYSKQNDYRYANHKKWNAFVLQYHMTPDITPYIEYDYLDRQGVYNGRDGVSFK-- | |||||||||||||
6 | 5o65A | 0.12 | 0.10 | 3.64 | 0.52 | HHpred | --------------YNEAS---GFFGNGKFSFETGITYARYDDNWTLDLTGRYNLDNRWQFDVNVPVVYRESTYQEESVSRDPTI-GDNFGIAYKFLDESA------TPDAVVSVRVKAPTGKE-PFGISLPGNGVWSITPGLSKTFDPAVLFGSVSYTHNLEDSFDDISSVNKVRLGDSFQFGVGVAFALNERSSFSVSDLIQRKKLGSDANAGYFNVG-TIAASENLTIVPNLAI-G-TDDAP-DFTFSLKFP | |||||||||||||
7 | 4rl8A | 0.08 | 0.08 | 3.05 | 1.00 | MUSTER | -----EVDPGDYEALPVATIGVVYYQHSTTDSAYANGHKVSSDFKLTSNVGILRLRLTLEPQFLLPFGRVSSSGDASALGDTSGVGDLTLTAPLKYR------LNEANDILGATVYLTANYNRDDALNLG-ENRWKVDLQAAYVKHL-GEKWAVDLVGDAIYSDNDDFGSSSARREQDVSYGAQLMGRYIVDPGTSLAIGL-NQIDGTAQDDRAETFRVTANKFFTAKDQLQMQLGR-VE-NGPKENFRLNLRYV | |||||||||||||
8 | 2f26A | 0.08 | 0.06 | 2.31 | 1.25 | CNFpred | ------------SLVVPAYAYRKLHPIQRPIPSAFCFLSHD-AQDTLECQVAEVETGEQRVVTLNARSHLRARVQAQSTNDGLDFQESQLVKKLVEPPPQ------GCQGSVISFPSPR---------------SPAQWLLYTHPTH-RADLGAYLNPRPP-----APEAWS-----EPVLLAKGSCAYSD------LQSMGTGPD--------GSPLFGCLYEANDYEEIVFLMFTLKQAF------------- | |||||||||||||
9 | 5o65A | 0.10 | 0.09 | 3.46 | 0.93 | HHsearch-2 | -------PAQSSNLYNEASG---FFGNGKFSFETGITYARYDDNWTLDLTGRYNLDNRWQFDVNVPVVYRESTYQEESVSRDPTIGDVNFGIAYKFLDESA------TPDAVVSVRVKAPTGKE-PFGISLTGNGVWSITPGLSKTFDPAVLFGSVSYTHNLEDSFDDISSVNKVRLGDSFQFGVGVAFALNERSSFSVSDLIQRKKLGSDANAGYFNVG-TIAASENLTIVPNLAI-G-TDDA-PDFTFSLKFP | |||||||||||||
10 | 5o65A | 0.10 | 0.09 | 3.35 | 1.17 | Neff-PPAS | ---------SVSNLYNEASGFFGNG---KFSFETGITYARYDDNWTLDLTGRYNLDNRWQFDVNVPVVYRESTYQEESVSRDPTIGDVNFGIAYKFLDE------SATPDAVVSVRVKAPTGKEPFGIKLVYVPESWSITPGLSVKTFPAVLFGSVSYTHNLEDSFDDISSDVNQKVGDSFQFGVGVAFALNERSSFSVSDLIGWQSIVSSDANAGYFNVGTIAASENLTIVPNLAIGTDDAP---DFTFSLKFP | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |