>PF11079 (259 residues) MQQHEIHQFLERYFRANECDILEADDGYIKVQLSIEMDKELMNRPFYWHYIERTGGTPAP MQLTLITKQTEKTNSLEGERLHFGSPRLHQIFRSAQKRGGFIRLYEEVDTYQQSHIPLHP WLGLNVKISYQCDRTKDQILSLGLHLISGTIIEQFHDRLQKLKLTPKIPDYCFTISPLIK PKSGIGRLEQYIRRHIFQDDHTWAEKAKERWAEDLALLDHFYEGMEEKPECYYIEKEALE EQYKPRIIVSVINGGLFYL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | MQQHEIHQFLERYFRANECDILEADDGYIKVQLSIEMDKELMNRPFYWHYIERTGGTPAPMQLTLITKQTEKTNSLEGERLHFGSPRLHQIFRSAQKRGGFIRLYEEVDTYQQSHIPLHPWLGLNVKISYQCDRTKDQILSLGLHLISGTIIEQFHDRLQKLKLTPKIPDYCFTISPLIKPKSGIGRLEQYIRRHIFQDDHTWAEKAKERWAEDLALLDHFYEGMEEKPECYYIEKEALEEQYKPRIIVSVINGGLFYL | |||||||||||||||||||
1 | 6bogA | 0.08 | 0.08 | 3.00 | 1.19 | CNFpred | DDDTNLIAFAMNLFDIIGINQDDRGDNMIVLTPSDHMLVPD--------------PGLSEDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDSSTISLLKNKALPV----GTLLVELIYVVEAQA-FLPPTPVRMLLDK-NGNNLAVEFETFNR-QLNAVNRHTGSKLVNQQDVHAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAVN-DELTAIESNRQQVMESLQAGWRLDALRLIVVTH | |||||||||||||
2 | 3dmqA | 0.10 | 0.09 | 3.40 | 1.66 | HHsearch-2 | DDDTNLIAFA-NLFDIIGINQDDRGDN-IVLTPSDHL---VP--DF--------PGLS-EDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDTGSSSLLKNK----ALPVGTLLVELIYVVEAQAPKQLNRFLPL-LDKNGNNLAAQVEFETFNRQLNAV-NRHTGKLAVQQDVHAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAVNPNDLTAIESNRQQVE--SLDQAGWRLDALRL--- | |||||||||||||
3 | 3dmqA | 0.10 | 0.09 | 3.40 | 2.50 | HHsearch | DDDTNLIAFA-NLFDIIGINQDDRGDN-IVLTPSDHL---VPD--F--------PGLS-EDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDTGSSSLLKNK----ALPVGTLLVELIYVVEAQAPKQLNRFLPL-LDKNGNNLAAQVEFETFNRQLNAV-NRHTSKLNVQQDVHAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAVNPNDETAIESNRQQVESLDQAGWR--LDALRL--- | |||||||||||||
4 | 5cqcA1 | 0.09 | 0.07 | 2.66 | 0.80 | SPARKS-K | MNSSRLHKLYSLFFDKLGDDVSVLLTGAYGFQSK--------KNDQQIFLFRPDSD------YVAGYHVDA---KSDAGWVN---DKLDRRLSEISEFCSILPFVEMPTDITKGVQH-------QVLLTISYDPKSKQLTPTVYDSIGRTCDEILTQSIEKADFTLGKFTRAAYNTEGNCGSYTFRTIKEVISSSAQGLTSQHVQDIESCIKYRVVDIESALTEGKTLP------------------------------ | |||||||||||||
5 | 3dmqA4 | 0.08 | 0.07 | 2.56 | 0.82 | FFAS-3D | ---------------------------------PQD---------------RLFAGQIDRDRFALRYRARKYSSEQFRQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTL--LVELIYVVEAQAPKQLQLNRFLLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNAVQVHAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAVNDDELTAIESNRQQVESLDQAGWRLDALR------ | |||||||||||||
6 | 3dmqA | 0.10 | 0.09 | 3.39 | 0.87 | HHpred | DDDTNLIAFA-NLFDIIGINQDDRGDN-IVLTPSDHL---V--PDFP-------GLS--EDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDSSTSLLKN-KA---LP-VGTLLVELIYVVEAQAPKQLNRFLPL-LDK-NGNNLAAVEFETFNRQLNAVNRHTKLVNAVQQDVHAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAVNPNRDTAIESNRQQVESLDQAGWRLDALRL----- | |||||||||||||
7 | 5cwmA | 0.11 | 0.09 | 3.24 | 0.64 | MUSTER | -DPEDELKRVEKLVKEA-LRQAKEKGSEEDLEKALRTAEEAARE--AKKVLEQAEKEGDP--------------EVALRAVELVVRVAELLLRIAKESG-------SEEALERALRVAEEAARLAKRVLELAEKQGDEVALRAV-----ELVVRVAELLLRIAKESGSEELERALRVAEEAARLAKRVLELAEKQGDPEVARRAVELVKRVAELLERIARESEEAKERAERVREEARELQERVK-ELRER--------- | |||||||||||||
8 | 1bw0A | 0.09 | 0.07 | 2.50 | 0.71 | CNFpred | ---------YETVCKAYGIGMHFYNCRDWEADL-DEIRRLKD----------------DKTKLLIVTNPS-------PCGSNFSRKHVEDIVRLAEELRLPLFSDEI-TFTSVADFETTVPRVILGGTAMNLVVPGWRLGWLLYVDP-HGNGPSFLEGLKRVG----------------LVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGEC-------------------IGLAPTMPRGAMYLM | |||||||||||||
9 | 3dmqA4 | 0.09 | 0.07 | 2.65 | 0.97 | HHsearch-2 | ---------------------------------------------FSKPQDRLFAGQIDR-DRFALRYRARKYSSEQRQFITWEHPLIRNGLDLILSGDTGSISLLKNK----ALPVGTLLVELIYVVEAQAPKQPPTPVRL-LDKNGNNLAAQVFETFNR-QLNA-VNRH-TGSKLVNAVQQDVHAILQLGEAQIEKSARALRNEADEKLSAELSRLEALRAVNPDDETAIESNRQQV--ESLDQAGWRLDALRL--- | |||||||||||||
10 | 2qa1A3 | 0.09 | 0.08 | 3.19 | 0.60 | Neff-PPAS | -----------------EVVVLERLVGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGLPIDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGA--------GVTVEVRGPEGKHTLRAAYLVGCDG--GRSSVRKAAGFDFPGTAATNATRQVTEYRSIQDAVNLGWKLGAVVNGTADSYHSERHAVGKRLLMNTQAQGLLFLSGPEVQPLRDVLTELIQYGEVARHLAGMVSGLE | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |