>PF11067 (297 residues) ARDAQAAQLAPALLLMLQRQRLSRWGLGVLVQGFWLLTLITALLTLLALLATRRYGFVWE STLLGGDSFIAMTQAIGSLPALLGFSLPDAELIRASGDSALANESARLSWAGWLVGVLVV YGILPRLALLLLCLWRWRRGCAALSLDLSLPGYSLLRERLQPSSERLGVCDAAPAQLHQP QAGNHSEGSQGALLVAIELDPQRSWPPVLPKGIGDAGVIDSREQRNQLLDQLNRFPPARL LIACDPRRSPDRGSLALLGELARSAAATRIWLLPPPPGEALDSARLGDWHRALEQLQ |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | ARDAQAAQLAPALLLMLQRQRLSRWGLGVLVQGFWLLTLITALLTLLALLATRRYGFVWESTLLGGDSFIAMTQAIGSLPALLGFSLPDAELIRASGDSALANESARLSWAGWLVGVLVVYGILPRLALLLLCLWRWRRGCAALSLDLSLPGYSLLRERLQPSSERLGVCDAAPAQLHQPQAGNHSEGSQGALLVAIELDPQRSWPPVLPKGIGDAGVIDSREQRNQLLDQLNRFPPARLLIACDPRRSPDRGSLALLGELARSAAATRIWLLPPPPGEALDSARLGDWHRALEQLQ | |||||||||||||||||||
1 | 3k07A | 0.10 | 0.09 | 3.26 | 0.59 | SPARKS-K | DRSQLIDRAIDNLSGKLLEEFIVVAVVCALFLLVAIISLPLGLCIAFIVMHFQGLNAN----------IMSLGGIAIAVGAMVDAAIVMIENAHKRLEEWQTRWQVITDASVELFGPLAFTKTYAMAGAALLAIVIPILMGYWPLNRFLIRVYHPLLLKVLHWPKTTLSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTLPGIS-------------AAEAASMLQKTDKLIMSVPEARVFGKTGKAETATDSA---------PLEMVETTIQLKPQEQWRPGMTMDKIIEELDNTV | |||||||||||||
2 | 2r17C | 0.12 | 0.11 | 3.82 | 0.81 | FFAS-3D | ----DEQSLVGRFIHLLRSEDPQQYLILNTARKHFIRFTLPPLVFAAYQLA-FRYKENSKVDDKWEKKCQKIFSFAHQTISALIAELAELPLLQGALAAGEIGFENHETVAYEFSQAFSLYEDESKAQLAAITLIIGTFE----RKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCASGRNTDKNGE-------ELHGGKRVECLKKALKIANQCDPSLQVQLFIEILNR---YIYFYEKENDAVTIQVLNQLIQKIREDLPNL--------ESSEETEQINKHFHNTLEHLR | |||||||||||||
3 | 1ii0B | 0.15 | 0.14 | 4.73 | 0.37 | HHpred | ----DPQAAAQQYRARIVIKGVLPDDVSSINQLSGCTTEIAAFDEFTGLLTDTRFDHIIFDTLKQREQYAYAVEALSDPKRLVLVARLQKSTLQEVART---------------HLELAAIGLLPKTENDTLAAAIWERALANLPADLNMVGVSAL-SRLLSTQPQQ---RPDIPSIARNEHGGKGDMGFLNNLQVSRIDPHEETE-RYRQHVETKGKMDTAPTGTTPMMLLQDPERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSIRMRAQQELPQIESVKRQ- | |||||||||||||
4 | 5tgzA | 0.09 | 0.08 | 3.20 | 0.74 | MUSTER | A---GSVIFVYSFIDFHVFHRKD-SRNVFLFKLGGVTASFTASVGSLFLAAIDRY---AYKRIVTRPKAVVAFCLMWTIAIVIAV----LPLLGWNCEKLQSVSDIFPHIDKTYLMFWIGVVSVLLLFIVYAYMYILWKAHSHAVAKSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGDDSIELQDDFIPLFDSLEETGA------------QGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAEIVGLRIDGDPRAARDDIVGWAHDVRGAIP | |||||||||||||
5 | 5t0oA | 0.07 | 0.07 | 2.72 | 0.93 | CNFpred | LKNFRATLIPMIAVPVSLLGTFAGLSINLLTLFALILAIGIVVDDAIIVVENIDRILHENEQISVKDAAIQAMQEVSSPVISIVLV--LCAVFVPVSFISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALF-KKFNDFFDWS--SVFSAGVAYILKRTIRFVLIF-AIFYLYKAVPNSLVPEEDQGLMISIINLPSASALHR-------------TISEVDHISQEVLKTGVKDAMAMIGFDLFTSSLKE----------NAAAMFIGLQDWKDRSADQIIAELNKKFAFDR | |||||||||||||
6 | 3h2yA | 0.13 | 0.09 | 3.03 | 0.39 | HHsearch-2 | -----------------------------------------------------------------DDDFLRILNGIGKSDALVGSWLPGLHRFVGNNKVLSVKHDKVKHWRYSAK----QLGLKPE--------------DVFLISAAKGQGIAELADAIEYYGKDVYVVGKEFSD-ETENVITTSHFP---DLIDIPLDEESLTPGIINHH-Q-AHYV-GKQS----LKLITPKEIKP-VFQLNEEQTLFSGLADYVS-----GGRRAFTCHFSNRLTTKLEKADELYKNHAGDLP | |||||||||||||
7 | 5tgzA | 0.11 | 0.11 | 3.87 | 0.75 | Neff-PPAS | --DLLGSVIFVYSFIDFHVFHRKDSRNVFLFKLGGVTASFTASVGSLFLAAIDRYISIAYKRIVTRPKAVVAFCLMWTIAIVIAVLPLLGWNCEKLQSSDIFPHIDKTYLMFWIGVVSVLLLFIVYAYMYILWKAHSHAVAKALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGDDSIELQ-----------DDFIPLFDSLEETGAQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAEIVQGLRIDGDPRAARDDIVGWAHDVRGAI | |||||||||||||
8 | 2l69A | 0.12 | 0.04 | 1.32 | 0.42 | HHsearch | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNIVIVVF--STDEETLRKFKDIIKKVRTVRSPQELKDSIEELVKKYNATIVVVVVD----DKEWAKAIRFVKSLGA--QVLIIIYD----QDQNRLEEFSREVRRR- | |||||||||||||
9 | 1azwA | 0.09 | 0.07 | 2.60 | 0.66 | SP3 | LVDNTTWDLVADIERLRTHLGVDRWQV--------FGGSWGSTLALAYAQTH-------------PQQVTELV--------LRGIFLLRRFELEWFEGASRLFPDAWEHYLNAI---------------PPVERADLMSAFHRRLTSDDEATRLAAAKAWSVWEGATSFLHVDEDFVTGHEDAHFALAFARIE----------------NHYFVNGGFFEVEDQLLRDAHRIADIP--GVIVHGRYVVCP----LQSAWDLHKAWPKAQLQISPASGHSAFEPENVDALVRATDGFA | |||||||||||||
10 | 5tgzA | 0.12 | 0.12 | 4.13 | 0.82 | PROSPECTOR2 | GGRGEGSVIFVYSFIDFHVFHRKDSRNVFLFKLGGVTASFTASVGSLFLAAIDRYISLAYKRIVTRPKAVVAFCLMIAVLPLLGWNCEK----LQSVCSDIFPHIDKTYLMFWIGVVSVLLLFIVYAYMYILWKAHSHAVAKALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGDDSI------------ELQDDFIPLFDSLEETGAQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAEIVQDGLRIDGDPRAARDDIVGWAHDVRG | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |