Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | MTIWEISEKADYIAQRHRRLQDQWHIYCNSLVQGITLSKARLHHAMSCAPDKELCFVLFEHFRIYITLADGFNSHTIEYYVETKDGEDKQRIAQAQLSIDGMIDGKVNIRDREQVLEHYLEKIAGVYDSLYTAIENNVPVNLSQL |
1 | 3zpmA | 0.15 | 0.14 | 4.90 | 0.77 | SPARKS-K | | IPPEVSSQITDALTQGLLDFLSLLNAILEGLLNTILDQVTGLLLSLEFSPDSKIDIWIPLELSVYLKLLEPLTRTDIRVQLRLEDGKYRLAFGHCSLLPRAQSGNPAVLGTIENALGNFITTLNSLVNNLINLILDRANVDLSV- |
2 | 5uwaA | 0.10 | 0.08 | 3.10 | 0.69 | FFAS-3D | | ----QVKYAGALVLGQYYKSPAQREAYFAAFREYLKQA-----YGQALAMYHGQTYQIAPEIRVTIIDPNGRPPVRLDFQWRKNSQTGNWQAYDMIA------EGVSMITTKQNEWGTLLRTKG--IDGLTAQLKSQQKITLE-- |
3 | 4ylrA1 | 0.13 | 0.12 | 4.05 | 0.33 | HHpred | | GSKRSIKWFTEFLQANQHDVAKFWSDISELVVKTLIVAEPHVLHAYRCRPSESVCFE---VLGFDILLDRKLKPWLLQ--INRAPSFGTDDVKLLNIRTMGNYRRIYPPEDKA-LLEKYENLLAVAFQTFLSGR----------- |
4 | 1fxkC | 0.15 | 0.13 | 4.41 | 0.69 | MUSTER | | AALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSD--IQGKDGSETLVPVGAGSFIKAELKDT--IMSVGVAIKK-NFEDAMESIKSQKNE---------LESTLQKMGENLRAITDIMMKLSPQAEE-----LAAV |
5 | 5amrA | 0.10 | 0.10 | 3.58 | 0.75 | CNFpred | | --NFILNEFGSRIKDANKETYDNMHKIFEGYWQCISDFSTLMKNILSVSQ-NTFRIAMCNNNVFAIVFPS-ATVVYSIIVLHKEEENINPGCLHGTFKCNGYISISRAIRLDKERCQRIVSSPGLFLTTCLLFKHDNPTLVMSDI |
6 | 2pffB | 0.12 | 0.11 | 3.88 | 0.53 | HHsearch-2 | | QGMGMDLYKTSKAAQ------DVWNRADNHFKDTYGFSNNPVNLTIHFGGEK--------GKRIRENYSAMIFETIVDGKLKTEKIFEINSTSYTFRSEKGLLSATQFTQPALTLMEKSKGLIVVFYRGMTMQVPRDELGRSGRV |
7 | 4m9bA | 0.08 | 0.08 | 2.96 | 0.70 | Neff-PPAS | | -----PAKLYNAMKDADSITPKIIDDVKSVEIVEGNGGPGTIKKLTIVEDGETKFILHKYAYNYSVVGGVALTAEKITFETKLVEGPNGGSIGKLTLKYHTKGDAKPD----EEELKKGKAKGEGLFRAIEGYVLANPTQY---- |
8 | 6h02A1 | 0.16 | 0.10 | 3.21 | 0.35 | HHsearch | | -------------------METQLQSIFEEVVKTE-------------------------------VIEEAFPGMFM----D-TPEDEKTKLIS-CLGAFRQFWGGLSQESHEQCIQWIVKRISFLYDCLAMAVETGL-LPPRL- |
9 | 1vhmB | 0.07 | 0.07 | 2.83 | 0.62 | SP3 | | MNYADLNRDFNALMAGETSFLATLANTSALLYERLTLEDDTLVLGPFQGKIACVRIPVGRGVCGTAVARNQ--VQRIVFDGHIACDAASNSEIVLPLVVKNQIIGDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTD--YKKFF |
10 | 3zc4A | 0.11 | 0.10 | 3.52 | 0.58 | PROSPECTOR2 | | PVAETISKRFWTLIKDPKQIKDVLSE-ALREFVSYTSSSSSRSIVIYDDPKNPVTAQAPCLVVAKRDEIPQNFPSIYRYTIYKIDKSSEYCISPLVVND----KYATLITPNESVIKEFFDKLDQYARVLASLAVGGE------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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