>PF10647 (262 residues) GSMVSVTETGVTPVPGYFGSARNMRSLALSQDGKLVAAVADTGRPAPEPASSLMVGAYED GAASVLEGGAITRPTWAPDNSAIWAAVNGNTVIRVLREPGTGRTSVVNVDAGAVTALGAT ITELRLSRDGVRAALIVDGKVYLAIVTQTPGGQYALTNPRAVAIGLGSPALSLDWSTSDT IVVARAASDIPVVQVAVDGSRMDALPSRNLTAPVVAVDASTTTEFVADSRAVFQLNNNDP AGDRYWREVPGLTGVKAIPVLP |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | GSMVSVTETGVTPVPGYFGSARNMRSLALSQDGKLVAAVADTGRPAPEPASSLMVGAYEDGAASVLEGGAITRPTWAPDNSAIWAAVNGNTVIRVLREPGTGRTSVVNVDAGAVTALGATITELRLSRDGVRAALIVDGKVYLAIVTQTPGGQYALTNPRAVAIGLGSPALSLDWSTSDTIVVARAASDIPVVQVAVDGSRMDALPSRNLTAPVVAVDASTTTEFVADSRAVFQLNNNDPAGDRYWREVPGLTGVKAIPVLP | |||||||||||||||||||
1 | 3dm0A | 0.13 | 0.11 | 3.86 | 0.10 | HHWb | KSIILWKLTKGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG--------ELRLWDLAAGVRRFVGHKDVLSVAFSLDNRQIVSASRDRTI-KLWNT-LGE-------CKYTIEGHRDWVSCVRFSPNTLTIVSASDKTVKVWNLS---NCK----LRSTLAGHT-GYVSTVAVSPDGSLCASGGKGVVLLWDLA-EGKKLYSLEAN---SVIHALCFSPNRWLCAATEHGIKIWDL-----ESKSIVEDLKVDLKSLNWS | |||||||||||||
2 | 3mkqA | 0.09 | 0.08 | 3.15 | 1.78 | SPARKS-K | GRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF--------RIRVFNYNTGVVDFEAHDYIRSIAVHPTKPYVLSGSDDLT-VKLWNWENNW------ALEQTFEGHEHFVMCVAFNPKPSTFASGCLDTVKVWSL---GQST----PNFTLTTGQERGVNYVDYYPDKPYMITASDDTIKIWDY-QTKSCVATLEGHMS--NVSFAVFHPTLIIISGSDGTLKIWNS-----STYKVEKTLNVGRSWCIAT | |||||||||||||
3 | 2ivzD2 | 0.16 | 0.15 | 4.81 | 1.56 | FFAS-3D | --VSDYDGYNQFVV---HRSPQPLMSPAWSPDGSKLAYVTFES-----GRSALVIQTLANGAVRASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ------VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA-----PQRITWEGSQNQDADVSSDGKFMVMVSSQ--HIAKQDLATGGVQVLS-STFLDETPSLAPNGTMVIYSSSQGLNLVSTDGRFK----ARLPATDGQVKFPAWP | |||||||||||||
4 | 3dm0A | 0.13 | 0.11 | 3.86 | 0.10 | HHpred | KSIILWKLTKGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG--------ELRLWDLAAGVRRFVGHKDVLSVAFSLDNRQIVSASRDRTI-KLWNT-LGE-------CKYTIEGHRDWVSCVRFSPNTLTIVSASDKTVKVWNLS---NCK----LRSTLAGHT-GYVSTVAVSPDGSLCASGGKGVVLLWDLA-EGKKLYSLEAN---SVIHALCFSPNRWLCAATEHGIKIWDL-----ESKSIVEDLKVDLKSLNWS | |||||||||||||
5 | 2ojhA | 0.14 | 0.13 | 4.40 | 1.54 | MUSTER | SSIEIFNIRTRKRV--VWQTPELFEAPNWSPDGKYLLLNSEG-------LLYRLSLAGDPSPEKVDTGFANNDHGISPDGALYAISDKVEFAIYLLPS-TGGTP--------RLTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSDIDSG------VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTQQIWRVRVDGSSVERITDS--AYGDWFPHPSPSGDKVVFVDLDVRVQLDDGGNVETLFDLFGGQGTNSPNWSP | |||||||||||||
6 | 2ynpA | 0.10 | 0.09 | 3.35 | 2.67 | CNFpred | GRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDD--------FRIRVFNYNTGEKVVDF-DYIRSIAVHPTKPYVLSGSDD-LTVKLWNWEN------NWALEQTFEGHEHFVMCVAFNPKPSTFASGCLRTVKVWSLGQS-------TPNFTLTTGQERGVNYVDYYPLKPYMITASDLTIKIWDYQT-KSCVATLEGH--MSNVSFAVFHPTPIIISGSEGTLKIWNSS-----TYKVEKTLNVGLERSWCI | |||||||||||||
7 | 3dm0A | 0.13 | 0.11 | 3.86 | 0.40 | HHsearch-2 | KSIILWKLTKGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG--------ELRLWDLAAGVRRFVGHKDVLSVAFSLDNRQIVSASRDRTI-KLWNT-LGE-------CKYTIEGHRDWVSCVRFSPNTLTIVSASDKTVKVWNLS---NCK----LRSTLAGHT-GYVSTVAVSPDGSLCASGGKGVVLLWDLA-EGKKLYSLEAN---SVIHALCFSPNRWLCAATEHGIKIWDL-----ESKSIVEDLKVDLKSLNWS | |||||||||||||
8 | 5fvmC | 0.10 | 0.09 | 3.26 | 1.63 | Neff-PPAS | -RLYDIRSNNPNPVSSFEGHKGNVTSIAFQQENRWMVSSSED------GTIKVWDVRSPSVQRNYKHNAPVNEVAIHPNQGELISCDQD-GNIRIWDLGENQCTNQLT------PEDNTPLQSLSVASDGSMLVAGNNKG-NCYVWRMPHHTDASTLEPVTKFKSHTKYITRVLLSADVKNLATCSADHTARVWNIEDNY-QLETTLDGHQRWVWDCAFSADSAYLVTA--------CSDHYVRLWDLSTSEI----VRQYG | |||||||||||||
9 | 6mzcG | 0.12 | 0.11 | 3.88 | 0.65 | HHsearch | STVRVGGGGGGGGGKILYGHSGPVYGASFSPDRNYLLSSSEDG--------TVRLWSLQTFTVGYKGHYPVWDTQFSPYGYYFVSGGHDRVA-RLWATD-HYQ------PLRIFAGHLADVNCTRFHPNSNYVATGSDRTVRLWDVL---NGN----CVRIFTGHK-GPIHSLTFSPNGRFLATGATGRVLLWDIG-HGLMVGELKGHT--DTVCSLRFSRDGILASGSDNTVRLWDAKAFEDLQELLLGTYMTKSTPVVH- | |||||||||||||
10 | 3dm0A | 0.13 | 0.11 | 3.86 | 0.10 | HHWm | KSIILWKLTKGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG--------ELRLWDLAAGVRRFVGHKDVLSVAFSLDNRQIVSASRDRTI-KLWNT-LGE-------CKYTIEGHRDWVSCVRFSPNTLTIVSASDKTVKVWNLS---NCK----LRSTLAGHT-GYVSTVAVSPDGSLCASGGKGVVLLWDLA-EGKKLYSLEAN---SVIHALCFSPNRWLCAATEHGIKIWDL-----ESKSIVEDLKVDLKSLNWS | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |