>PF10328 (260 residues) LTSIFGSTVNFYLFYKFLKRDGKANGFQKICLVKTLPNFMICFAFLLWVVPVTALDLTYS QLPYRLNSIVGSLAGSWAYLFTPFLQVSLSCNRFYVLYFPFGIKILKRVPVTNISIGSSI LLVTCVCSVGLQETCGYVYDPNYFTWRPEGLPCADKLSEVILFMIFSITFTSNAFNVGTG ARLLVNKMVGMNREEASRRRKRWMIMFTQSVIQDCLHLVDIINATYIWKLSEELWFQFLF LTLSFIIIYTLDGVVMFIFN |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | LTSIFGSTVNFYLFYKFLKRDGKANGFQKICLVKTLPNFMICFAFLLWVVPVTALDLTYSQLPYRLNSIVGSLAGSWAYLFTPFLQVSLSCNRFYVLYFPFGIKILKRVPVTNISIGSSILLVTCVCSVGLQETCGYVYDPNYFTWRPEGLPCADKLSEVILFMIFSITFTSNAFNVGTGARLLVNKMVGMNREEASRRRKRWMIMFTQSVIQDCLHLVDIINATYIWKLSEELWFQFLFLTLSFIIIYTLDGVVMFIFN | |||||||||||||||||||
1 | 4n6hA2 | 0.07 | 0.07 | 2.85 | 2.29 | SPARKS-K | AVCAVGLLGNVLVMFGIVRYTKMKTATNIYIFNLALADALATST-----LPFQSAKYLMETWPFELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIWVLASGVGVPIMVMAVTRPRDGAVVCMLQFPSPSWYWDTVTKICVFLFAFVVPILIITVCYGLMLLRLRSVRLLSGSKEKDRSLRRITRMVLVVVGAFVVCWAPIHIFVIVWTLVVAALHLCIALGYANSSLNPVLYAFLD | |||||||||||||
2 | 6m9tA2 | 0.11 | 0.11 | 3.99 | 2.30 | FFAS-3D | TMLLTGFVGNALAMLLVSRESKRKKSFLLCIGWLALTDLVGQLLTTPVVIVVYLSKQRWEHDPSGRLCTFFGLTMTVFGLSSLFIASAMAVERALAIRAPHWYASHMKTRATRAVLLGVWLAVLAFALLPVLGVGQYTVQWPGTWCFISTNWGNLFFASAFAFLGLLALTVTFSCNLATIKALVSRGSWGRITTETAIQLMAIMCVLSVCWSPLLIMMLKMI-----FNEKQKECNFFLIAVRLASLNQILDPWVYLLLR | |||||||||||||
3 | 4rnbA | 0.08 | 0.07 | 2.94 | 2.17 | HHpred | IVFVVALIGNVLVCVAVWKNHHMRTVTNYFIVNLSLADVLVTITCLPATLVVDITET--WFFGQSLCKVIPY-LQTVSVSVSVLTLSCIALDRWYAICHP------STAKRARNSIVIIWIVSCIIMIPQAIVMECSTVFKTTVCDERWGGEIYPKYHICFLVTYMAPLCLMVLAYLQIFRKLWCRQGIDQKAMSFSKQIRARRKTARMLMVVLLVFAICYLPISILNVLKDRETAWFTFSHWLVYANSAANPIIYNFLS | |||||||||||||
4 | 4n6hA2 | 0.06 | 0.06 | 2.65 | 1.89 | MUSTER | AVCAVGLLGNVLVMFGIVRYTKMKTATNIYIFNLALADALATSTLPFQSAKYLMETWPFG----ELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIWVLASGVGVPIMVMAVTRPRDGAVVCMLQFPSPSWYWDTVTKICVFLFAFVVPILIITVCYGLMLLRLRSVRLLSGSKEKDRSLRRITRMVLVVVGAFVVCWAPIHIFVIVWPLVVAALHLCIALGYANSSLNPVLYAFLD | |||||||||||||
5 | 1gzmA | 0.09 | 0.09 | 3.37 | 1.56 | CNFpred | LLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFV----GPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFR-FGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIF-GPIFMTIPAFFAKTSAVYNPVIYIMMN | |||||||||||||
6 | 6e59A | 0.07 | 0.07 | 2.85 | 0.80 | HHsearch-2 | VIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHN--EWYYGLFYCKFHNFFPI-AAVFASIYSMTAVAFDRYMAIIHPLQPRL--SATATKVVICVIWVLALLLAFPQGYYS-TTETMPSRVVCMIEPEHPNKYEKVYHILIYFLPLLVIGYAYTVVGITLWASEGIDGDAMSFSEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPPDIQQVYLAIMWLAMSSTMYNPIIYCCLN | |||||||||||||
7 | 4n6hA2 | 0.06 | 0.06 | 2.65 | 2.20 | Neff-PPAS | AVCAVGLLGNVLVMFGIVRYTKMKTATNIYIFNLALADALATSTLPFQSAKYLMETWPFG----ELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIWVLASGVGVPIMVMAVTRPRDGAVVCMLQFPSPSWYWDTVTKICVFLFAFVVPILIITVCYGLMLLRLRSVRLLSGSKEKDRSLRRITRMVLVVVGAFVVCWAPIHIFVIVWPLVVAALHLCIALGYANSSLNPVLYAFLD | |||||||||||||
8 | 4djhA | 0.09 | 0.09 | 3.47 | 1.30 | HHsearch | VVFVVGLVGNSLVMFVIIRYTKMKTATNIYIFNLALADALVTT-TMPFQSTVYLMN--SWPFGDVLCKIVLSIDY-YNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPLKAKIINICIWLLSSSVGISAIVLGTKVREDVDVIECSLQFPDDDYWDLFMFIFAFVIPVLIIIVCYTLMILRLKSRLLSGNIPNAYREKDRNLRRITRLVLVVVAVFVVCWTPIHIFILVGSAALSSYYFCIALGYTNSSLNPILYAFL- | |||||||||||||
9 | 4n6hA2 | 0.07 | 0.07 | 2.75 | 1.84 | PROSPECTOR2 | AVCAVGLLGNVLVMFGIVRYTKMKTATNIYIFNLALADALATSTLPFQSAKYLM---ETWPFGELLCKAV-LSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIWVLASGVGVPIMVMAVTRPRDGAVVCMLQFPSPSWYWDTVTKICVFLFAFVVPILIITVCYGLMLLRLRSVRLLSGSKEKDRSLRRITRMVLVVVGAFVVCWAPIHIFVIVRRDPLVVAALHLCIALGYSSLNPVLYAFLD | |||||||||||||
10 | 4djhA | 0.10 | 0.09 | 3.44 | 2.13 | SAM | -VFVVGLVGNSLVMFVIIRYTKMKTATNIYIFNLALADALVTT-TMPFQSTVYLMNS--WPFGDVLCKIVLS-IDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPLKAKIINICIWLLSSSVGISAIVLGGTKVRDVDVIECSLQFPDDDYWDLFMFIFAFVIPVLIIIVCYTLMILRLKSVRL--------REKDRNLRRITRLVLVVVAVFVVCWTPIHIFILVESAALSSYYFCIALGYTNSSLNPILYAFLD | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |