>PF10317 (292 residues) LQIFYPVFFVASLLIQIILMYLIFYHSPKSLQLMKVFLGNTCFFQILLVFVTCAAQFRMI STSVPIELRSYGPCRYLEAWVGYSMYQMLQTSAFMSGMSILITFFFKYEVVRCIELPRCR IIVIVLAFHIPIFISMIMEVIMIITQSLPDDVRQRYKLLNANVEEFSVIGALSLKTLPSI INFALISGSVVLAPFVCFFYRNKILLRINSQLNQHSKQRKTLIQVFVKGLTIQAFLPLIF YVPVFALYFYCILTHAEILFQQYFMTVVPSLPALFDPFVTLYFVTPYRRRLK |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | LQIFYPVFFVASLLIQIILMYLIFYHSPKSLQLMKVFLGNTCFFQILLVFVTCAAQFRMISTSVPIELRSYGPCRYLEAWVGYSMYQMLQTSAFMSGMSILITFFFKYEVVRCIELPRCRIIVIVLAFHIPIFISMIMEVIMIITQSLPDDVRQRYKLLNANVEEFSVIGALSLKTLPSIINFALISGSVVLAPFVCFFYRNKILLRINSQLNQHSKQRKTLIQVFVKGLTIQAFLPLIFYVPVFALYFYCILTHAEILFQQYFMTVVPSLPALFDPFVTLYFVTPYRRRLK | |||||||||||||||||||
1 | 3d4sA1 | 0.09 | 0.08 | 3.11 | 1.93 | SPARKS-K | MGIVMSLIVLAIVFGNVLVITAIAKF-ERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMW----------TFGNFWCEFWTSIDVLCVTASIWTLCVIAVDRYFAITSPFKSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRQEAINCYAEETC-----------CDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLLK--------EHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIKEVYILLNWIGYVNSGFNPLIYCRS-PDFRIAFQ | |||||||||||||
2 | 5tjvA1 | 0.09 | 0.08 | 3.03 | 2.07 | FFAS-3D | IAVLSLTLGTFTVLENLLVLCVILHSRSLRCRPSYHFIGSLAVADLLGSVIFVYSFIDFHVFHR-----------KDSRNVFLFKLGGVTASFTASVGSLFLAAIDRYISIHRPLAYKRIVTRPKAVVAFCLMWTIAIVIAVLPLLGWNCEKL---------------QSVCSDIFPHIDETYLMFWIGVTSVLLLFIVYAYMYILWKAGKRAMSFSDQARMDIRLAKTLVLILVV-LIICWGPLLAIMVYDVFGKMIKTVFAFCSMLCLLNSTVNPIIYALRSKDLRHAFR | |||||||||||||
3 | 4n6hA2 | 0.09 | 0.08 | 3.12 | 1.01 | HHpred | ITALYSAVCAVGLLGNVLVMFGIVRYTMK--TATNIYIFNLALADALATSTLPFQSAKYLMET-----WP------FGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKTPAAKLINICIWVLASGVGV-PIMV--MAV------------TRPRDGAVCMLQFPSPSWYWDTVTKICVFLFAFVVPIIITVCYGLMLLRLRSVRLSGSKEKDRSLRRITRMVLVVVGAFVVCWAPIHIFVIVWTLVDIDPVAALHLCIALGYANSSLNPVLYAFLDENFKRCFR | |||||||||||||
4 | 3dqbA | 0.11 | 0.11 | 3.80 | 1.39 | MUSTER | LAAYMFLLIMLGFPINFLTLYVTVQH-KKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGY----------FVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSFRFGENHAIMGVAFTWVMALACAAPPLVGWSR-------YIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQSATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMV | |||||||||||||
5 | 1gzmA | 0.11 | 0.10 | 3.70 | 1.43 | CNFpred | LAAYMFLLIMLGFPINFLTLYVTVQHKKL-RTPLNYILLNLAVADLFMVFGGFTTTLYTSLH----------GYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMNFRFGENHAIMGVAFTWVMALACAAPPLVG-----WSRYIPEGMQ----CSCGIDYYTPHTNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQ-FGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMV | |||||||||||||
6 | 5zbhA | 0.12 | 0.11 | 3.79 | 0.82 | HHsearch-2 | LALAYGAVIILGVSGNLALIIIILKQ--KEMRNTNILIVNLSFSDLLVAIMCLPFTFVYTL---------MD-HWVFGEAMCKLNPFVQCVSITVSIWSLVLIAVERHQLIINPGWRNRHAYV---------GIAVIWVLAVASS--LPFLIYQVMTNVTLDAYKDKYVCFDQFPSDRLSYTTLLLVLQYFGPLCFIFICYFKIYIRLKRRNIFEGKYRSSETKRINIMLLSIVVAFAVCWLPLTIFNTVFDWNHQIHNLLFLLCHLTAMISTCVNPIFYGFLNKNFQRDLQ | |||||||||||||
7 | 4djhA1 | 0.09 | 0.09 | 3.24 | 1.77 | Neff-PPAS | ITAVYSVVFVVGLVGNSLVMFVIIRY-TKMKTATNIYIFNLALADALVTTTMPFQSTVYLMNSWP-----------FGDVLCKIVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPLKAKIINICIWLLSSSVGISAIVL--------GGTKVREDVDVIECSLQFPDDDYSWWDLFMKICVFIFAFVIPVLIIIVCYTLMILRLKSVRLLSDRNLRRITRLVLVVVAVFVVC-WTPIHIFILVEALGSAALSSYYFCIALGYTNSSLNPILYAFLDENFKRCFR | |||||||||||||
8 | 5zbhA | 0.12 | 0.11 | 3.79 | 1.28 | HHsearch | LALAYGAVIILGVSGNLALIIIILKQ--KEMRNTNILIVNLSFSDLLVAIMCLPFTFVYTL---------MD-HWVFGEAMCKLNPFVQCVSITVSIWSLVLIAVERHQLIINPGWRPNRHAYV--------GIAVIWVLAVASS--LPFLIYQVMQNVTLDAYKDKYVCFDQFPSHRLSYTTLLLVLQYFGPLCFIFICYFKIYIRLKRRNIFEGKYRSSETKRINIMLLSIVVAFAVCWLPLTIFNTVFDWNHQTHNLLFLLCHLTAMISTCVNPIFYGFLNKNFQRDL- | |||||||||||||
9 | 5tjvA1 | 0.12 | 0.11 | 3.86 | 1.60 | PROSPECTOR2 | IAVLSLTLGTFTVLENLLVLCVILHSRSLRCRPSYHFIGSLAVADLLGSVIFVYSFIDFHVFHRK-----------DSRNVFLFKLGGVTASFTASVGSLFLAAIDRYISIHRPLAYKRIRPKAVVAFCLMWTIAIVIAVLPLLGWN--------CEKLQSVCSD--------IFPHIDETYLMFWIGVTSVLLLFIVYAYMYILWKAGKRAMSFSDQARM-DIRLAKTLVLILVVLIICWGPLLAIMVYDVFGKMNIKTVFAFCSMLCLLNSTVNPIIYALRSKDLRHAFR | |||||||||||||
10 | 5zbhA | 0.10 | 0.10 | 3.53 | 1.87 | SAM | -ALAYGAVIILGVSGNLALIIIILKQ-KEMRNVTNILIVNLSFSDLLVAIMCLPFTF----------VYTLMDHWVFGEAMCKLNPFVQCVSITVSIWSLVLIAVERHQLIINPGW-RPNNRHAYVGIAVIWVLAVASSLPFLIYQVMTDEPFQNVT---LDAYKDKYVCFDQFPSHRLSYTTLLLVLQYFGPLCFIFICYFKIYIRLKRRNIF-NKYRSSETKRINIMLLSIVVAFAVCWLPLTIFNTVFDWNHQNHNLLFLLCHLTAMISTCVNPIFYGFLNKNFQRDLQ | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |