>PF10225 (247 residues) NVTVTRRFDPKLFFIFLLGLVLFFCGDLLSRSQIFYYSTGMSVGIAASLLIVIFVLSKFM PKKSPIYVILVGGWSFSLYLIQLVLKNLQEIWRCYWQYLLSYVLTVGFISFAVCYKYGPL ENERSINLLTWTLQLMGLFFMYSGIQIPHIALAIIIIALCTKNLEYPIQWLFITYRKMCK AAEKTVPPRLLTEEEYRIQGEVETRKALEELREYCNSPDCSAWKTVSRIQSPKRFADFVE GSSHLTP |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | NVTVTRRFDPKLFFIFLLGLVLFFCGDLLSRSQIFYYSTGMSVGIAASLLIVIFVLSKFMPKKSPIYVILVGGWSFSLYLIQLVLKNLQEIWRCYWQYLLSYVLTVGFISFAVCYKYGPLENERSINLLTWTLQLMGLFFMYSGIQIPHIALAIIIIALCTKNLEYPIQWLFITYRKMCKAAEKTVPPRLLTEEEYRIQGEVETRKALEELREYCNSPDCSAWKTVSRIQSPKRFADFVEGSSHLTP | |||||||||||||||||||
1 | 5cwpA | 0.10 | 0.08 | 3.03 | 0.87 | SPARKS-K | -----------MSSDEEEARELIERAKEAAERAQEAAERTPRVRELARELKRLAQEAAEEVKRDPSSSDVNEALKLIVEAIEAAVRALEAAERTDPEVRELARELVRLAVEAAEEVQRNPSSSDVNEALKLIVEAIEAAVRALEALARELVRLAVEAAEEVQRVNEALKKIVKAIQEAVESLREAEESG---DPEKREKARERVREAVERAEEVQRDPSGWLE------------------------ | |||||||||||||
2 | 6bqtA | 0.11 | 0.10 | 3.47 | 1.04 | FFAS-3D | -MEKTELIQKAKLAEQAYDDMATCMKAVTEQGNLLSVAYKNVVGGRRSAWRVISSIEQKTDTSDKKLQLIKDYREKVESELRSICTTVLELLDKYLIAPESKVFYLKMKGDYFRYLAEVACGDDRKQTIDNSQGAYQEAFDISPTHPIRLGLALNFSVFYYEILNNPELACTLAKTAFDEAIAELDT---LNEDSYK-----DSTLIMQLLRDNLT-----LW------------------------ | |||||||||||||
3 | 5fgnA1 | 0.12 | 0.09 | 3.01 | 0.30 | HHpred | ------KLGSSALIALSLYSSLVLNYAFFAGADIFLYTMPVV--L-FFLSNFVFHVI-ALPFKVLIPLILVI-SAAVSYQEIFFKSMLNNVLQTTAPGYVLWIVCLGVLPALAYIAVKVKYRVWYKEFLTRLVLAAVS-------------FLCALGIAMYQDY----ASF---------FRNNKSVTHLIVPSNFIGA----GVSKYKD-WKRSNIP----------------------------- | |||||||||||||
4 | 5cwmA | 0.10 | 0.09 | 3.30 | 0.79 | MUSTER | ---DPEDELKRVEKLVKEAEELLRQAKEKGSEEDLEKALRTAEEAAREAKKVLEQAEKE-GDPEVALRAVELVVRVAELLLRIAKESGSEEALERALRVAEEAARLAKRVLELAEKQGDP--EVALRAVELVVRVAELLLRIAKGSEEALERALRVAEEAARLAKRVLELAEKQPEVARRAVELVKRVAELLERIARESGSEEAKERAERVREEAR----ELQERVKELRER--------------- | |||||||||||||
5 | 4xptA | 0.10 | 0.09 | 3.14 | 0.97 | CNFpred | -----------FSLGPGFGVLLAYAS-NVYKDALLTSFINSATSFIAGFVIFSVLGYMAHTLGVRIEDVATEGPGLVFVVYPAAIATSTFWALIFFMMLATLGLDSSFGGMEAIITALSDEFPKIKRNRELFVAGLFSLYFVVGLASCTQGGFYFFHLLDRYAAGYSILVAVFFEAIAVSWI-------------------YGTNRFSEDIRDMIGFPPGRYWQVCWRFVAPIFLLFITV------- | |||||||||||||
6 | 3jacA | 0.15 | 0.15 | 5.04 | 0.40 | HHsearch-2 | DILYRAATDVYALMFLADIVDIFFWAKHSAATDIASSLSDDQVPAFVFGTMVILYLRKTVLGKLAFQVVLIHIWMFLWYFVKCIYLSAYQIRCGYPTRILNLFLGFRLVPFLVELRADWVWTDTTLSLSNWMCVIYANIFIIKCSRETKYGMGGLIILFLIAIIWFPLLFMSLIR-SVV-GVVNQPSIVPFTPQAYEELSQQFDPLAMQFISQYSPEGSGALWRISSRANARRQLAQLLEGRPDIPH | |||||||||||||
7 | 5k7vA | 0.10 | 0.10 | 3.72 | 0.84 | Neff-PPAS | NKTTEKAVAEAIEEIARLATAAIQLIEALAKNLASEEFMARAISAIAELAKKAIEAIYRLADNHTTDTFMARAIAAIANLAVTAILAIAALASNHMARAISAIAELAKKAIEAIYRLAD--NHTTDKFMAAAIEAIALLATLAILAIALLASNHTTEEFMAKAISAIAELAKKAIEAIYRLADNHTSPTYI--EKAIEAIEKIARKAIKAIEMLAKNITTEEYKEKAKSAIDEIREKAKEAIKRLED | |||||||||||||
8 | 6djwA | 0.12 | 0.09 | 3.28 | 0.64 | HHsearch | SLSIYIK-------------------TNTGRTLSVNLEPQWD------IKNVKEIVAPQLQPEEV--KIIFAGTTIQECTVHRDPECWDDVLKPR------------RITCESQEIEHVSEKDFAAPLIKINIKDVPC-LACTEVSETVFPCE-SKHVTCLECF---EQYCRSRLRQFMEFIEEIHHFKLLSREEYARYQRFATEEYVLQ-AGLCPQPGCGMGLLV----EP--------ECKKVT- | |||||||||||||
9 | 1ac5A | 0.11 | 0.09 | 3.22 | 0.71 | SP3 | QNKDEGKIDK----------------NKFDED---------LEDVTKHFMDFLENYFKIFPLTRKII--LSYAGQYIPFFANAILNHNKFSKIDGDTYDLPNTQSLSYLPFAMEKKLIDESNPNFKHLTNAHENCQNLINSASTFSYQECENILNLLLSYTRESSQKGTADCLNMYNFNLKDSYPSCGMNWP-------------KDISFVSKFFSTPGIDHWKEC----TNSVGTKLSNPIS--KP | |||||||||||||
10 | 5cwmA | 0.08 | 0.07 | 2.87 | 0.96 | PROSPECTOR2 | D---PEDELKRVEKLVKEAEELLRQAKEKGSEEDLEKALRTAEEAAREAKKVLEQAEKE-GDPEVALRAVELVVRVAELLLRIAKESGSEEALERALRVAEEAARLAKRVLELAEKQGDP--EVALRAVELVVRVAELLLIAKESGSEEALERALRVAEEA------ARLAKRVLELAEKQ----------GDPEVARRAVELVKRVAELLERIARESGSEEAKERAE-RVREEARELQERVKELER | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |