>PF10081 (288 residues) IRVYVGLDTAPTPEERIDLVLAELERTGAFDRSTLVLIPTTGTGWVNPTAARAMELVHNG DLAMVAWQYSYLPSWISFLADREKAAAAGKMLVERVHERWSQLPEDDRPDLFLYGESLGT QSGEGAFDSLAEIRAQMDGVLWVGPPNSNRLWRQLVERRDPGTTEVQPVYADGLVVRFAD SREAIHEPETPWLSPRVLYIQHASDPVVWWSPDLLFSRPDWLSEPPGRDRLPQMRWFPFV TFWQVSADLTNAAGVPDGHGHNYGSAVLEGWIAVTQPEGWTENDTERV |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | IRVYVGLDTAPTPEERIDLVLAELERTGAFDRSTLVLIPTTGTGWVNPTAARAMELVHNGDLAMVAWQYSYLPSWISFLADREKAAAAGKMLVERVHERWSQLPEDDRPDLFLYGESLGTQSGEGAFDSLAEIRAQMDGVLWVGPPNSNRLWRQLVERRDPGTTEVQPVYADGLVVRFADSREAIHEPETPWLSPRVLYIQHASDPVVWWSPDLLFSRPDWLSEPPGRDRLPQMRWFPFVTFWQVSADLTNAAGVPDGHGHNYGSAVLEGWIAVTQPEGWTENDTERV | |||||||||||||||||||
1 | 5h6bA | 0.13 | 0.10 | 3.51 | 0.72 | SPARKS-K | ---------------TSRGWNDYSCKPSAAHPRPVVLVH--GTFGNSIDNWLLAPYLVNRGYCVFSLDYGQFHGLG-------PIDKSAEQLDVFVDKVLDATGAP---KADLVGHSQGGMMPNYYLKFLG-GADKVNALVGIAPDNHGLGLTKLLPFFSDNTPGLADQVAG------SPFITKLTAGGDTVPGVRYTVIATKYDQVVTPYRTQY------LDGPNVRNVCPVDLSE----------HVAIGTI---------DRIAFHEVANALDATPTTCASVI-- | |||||||||||||
2 | 5x88A | 0.19 | 0.11 | 3.69 | 0.67 | FFAS-3D | ---------------------NDLRDGPCKD---ITFIFARGSTEVGPDTCDELNREFRGRVACQGVGPRYEASLAGNFLPRGTTQAAIDEAAELFNLAHTKCPN---TQIVGGGYSQGAAVMHGAIPGLNAVKDQIKGVVLYGDT------------RNEQDGGRIPNFPTDKTNIICNPG-----------------------------------------------------------------DLVCDGTLILTAAHTYGTRVRGAVDWLED------------ | |||||||||||||
3 | 2czqA | 0.19 | 0.12 | 3.92 | 0.50 | HHpred | --------------------------------PQYVLINTRGTGEGFRTMNSQITAAL-SGGTIYNTVYTADFSQ-------NS-AAGTADIIRRINSGLAANPN---VCYILQGYSQGAAATVVALQQLGAAFNAVKGVFLIGNPDHKSGL-TCNVDSNGGTTT---RNVNGLS------VAYQGSVPSGWVS-KTLDVCAYGDGVCDTAHGF--------G-----INAQHLSYPSDVMGYKFAVNKLGG------------------------------------ | |||||||||||||
4 | 5h6bA | 0.15 | 0.12 | 4.09 | 0.74 | MUSTER | --------TSRGWND----------KPSAAHPRPVVLV---GTF--NSIDNVLAPYLVNRGYCVFSLDYGLPGVP---FHGLGPIDKSAEQLDVFVDKVLDATGAP---KADLVGHSQGGMMPNYYLKFLG-GADKVNALVGIAPDNHGLGLTKLLPFF-PGVEKFISDNTPGLADQVAGSITKLTAGGDTVPGVRYTVIATKYDQVVTPYRTQYLDGPN----------------VRNVL-------LQDLCPVDLS-EHTIDRIAFHEVANALPARATPTTCASVI | |||||||||||||
5 | 4gxrA | 0.10 | 0.08 | 2.82 | 0.91 | CNFpred | ------------LVARAGRVANVLVARGLQVGDRVAAQTEM----SVEALVLYLATVRAGGVYLPLNTA---------------TLHELDYFITDA-----------EPMIVVCDPS--------MRDGIAAIAAMVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGT---------TGRSMGAMLSHD------NLASNSLTLVDYWRFTP----DVLIHALPIYHTHGLFVASNVTLFARGSMI-TVLMGVPTFYTRLLQSPRLTMETTGHM | |||||||||||||
6 | 2o7vA1 | 0.15 | 0.06 | 2.00 | 0.53 | HHsearch-2 | VRLFLPRHALY-----------------N-SAKLPLVVYFHGGGFILFSAHDFCEMAVHAGVVIASVDYRLAPEH-----RLPAAYDDAM----EALQWIKDSRDADFSNCFIMGESAGGNIAYHAGLRAAAVADELLPLKIKG------------------------------------------------------------------------------------------------------------------------------------------------ | |||||||||||||
7 | 5xb6A | 0.11 | 0.11 | 3.86 | 0.77 | Neff-PPAS | NKVSFTNSNNPTISLSAVIYFP--PKFDETRQYQAIVLSHPGGGVKEQTAGTYAKKLAEKGFVTIAYDASYQGGEPRQLENPYIRTEDISAVIDYLTTL----SYVDNTRIGAMGICAGAGYTANAAIQDR----RIKAIGTVSAVNIGSIFRNGWENNVKSSNARTSDISSGEYAIMPLAPMKESDAPNEELRQAWEYYHTPRAQYPTAPGYATLRSLNQIITYDAYHMAEVYLTQPTQGSKWMSDDLYDRASSQDGANHMDLYDGKAYVAEAISVAPFFEETL--- | |||||||||||||
8 | 3gbsA | 0.18 | 0.11 | 3.62 | 0.55 | HHsearch | ------LT-----------GGDELRDGPCKPI-TFIFARASTLGISGPAVCNRLKLA-RGDVACQGVGYTADLPSN-ALPE-GTSQAAIAEAQGLFEQAVSKCPD---TQIVAGGYSQGTAVMNGAIKRLSDVQDKIKGVVLFGYTRNAQE---------RGQ---IA----------------------NFPKDKVKVYCAVGDLVCLGTL--------I-------VAPPHFSYLS---DTGDASDFLLSQ---------------------L------------- | |||||||||||||
9 | 1lbtA | 0.13 | 0.11 | 3.85 | 1.05 | SP3 | ------LPSGSDPSQPKSVLDAGLTCQGASVSKPILLVPGTGTTGPQSFDSNWIPLSTQLGYTPCWIS---PPP-----FMLNDTQVNTEYMVNAITALYAGSGNN---KLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYKGTVLAGPLDALAVSAPSVWQQTTGSAL------TTALRNAGGLTQIVPTTNLYSATDEIV---------QPQVSNSPLDSSYLFNGKNVQ----------AQAVCGPLFVIDHATSQFSYVVGRSALRANDLTPEQKVAA | |||||||||||||
10 | 1gkpa2 | 0.09 | 0.08 | 2.95 | 0.91 | PROSPECTOR2 | YIEMCCPSRNDDALEGYQLWKSKAEGNSYCDYTFHM----AVSKFDEKTEGQLREIVADGISSFIFLSYKNFFG-----VDDGEMYQTLRLAAELVGRLQQKLLSEGKTGPEWHEPSRPEAVEAEGTARFATFLETTGATGYVVHLSCKPALDAAMAAKARGVP-----------IYIESVIPHFLLDKTYAERGGVEAMKYIMSPPLRDKRNQKVLWDALAQGFIDCPFDTE-------QKLLGKEAFTAIPNGIPAIED----RVNLLYTYGVSRGRLDIHRFVDA | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |