>PF09937 (283 residues) RVVVVKGTFDLVPDGPARLRPEPDMPSGDVHLDGDPARSLLYPSDFAIFKPRTDVTLTGN AYAPGGGAPAAQVRFRFGRGSAGFERKIAVFGERRWERAVVALAPTAPRPFTSLPLVHEH AYGGPGFDANPVGVGRAPGPDGATRLPSLEDPERLIRDPTDTPAPVGFGPVPARWSRRTQ MLGTYDARWRVERWPWFPEDFDWAYFQAAPPAQQLDAVRGDESFALEGMRPDIPLLEGRL PGVRARAFAQRTREAGSELLEVLLRLDTVHFDVEAMKLDLVWR |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | RVVVVKGTFDLVPDGPARLRPEPDMPSGDVHLDGDPARSLLYPSDFAIFKPRTDVTLTGNAYAPGGGAPAAQVRFRFGRGSAGFERKIAVFGERRWERAVVALAPTAPRPFTSLPLVHEHAYGGPGFDANPVGVGRAPGPDGATRLPSLEDPERLIRDPTDTPAPVGFGPVPARWSRRTQMLGTYDARWRVERWPWFPEDFDWAYFQAAPPAQQLDAVRGDESFALEGMRPDIPLLEGRLPGVRARAFAQRTREAGSELLEVLLRLDTVHFDVEAMKLDLVWR | |||||||||||||||||||
1 | 4fj6A2 | 0.10 | 0.09 | 3.24 | 1.06 | SPARKS-K | AAFRIPGLVTT-NNGTL-------LGVYDIRYNSSVDLQEK--------------IDIGVSRSTDKPRVATVGDPSILVDEK--TNTIWVVAAWTHGGNERAWWNSPGTPDETAQLLVKSEDDGPSWYFLLQGPGRGITQDGTLVFPIQFIDAHLHNLARTNTTEAQVAEVEPG------VLLNRDN---RGGSRAVHPSSRSALESVCASLIKVNANITGDLLLFSNPNTTKGR-------NHITIKASLDGGLTWPQVLLAEGWGYSCLSIDKETVGIFYE | |||||||||||||
2 | 1maeH | 0.08 | 0.07 | 2.95 | 1.15 | Neff-PPAS | ----ILGHVNGGFLPNPVAAHSGSEFTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWM-------NANTPNNADLLFFQFGLVVQGGSSDDQLLSSPTCYHIHPGASTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWK----LHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALS | |||||||||||||
3 | 1crua | 0.09 | 0.09 | 3.39 | 1.02 | PROSPECTOR2 | DKVILSHALLWGPDNQIRVNPESGVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSKELPNQTIIRRYSTDTLEKPVDLLGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGSIPKDNPNYGWPNVAGYKDDSGYAYANYSAAANKSIKDLAQNGVKVAAGVPVTKESEWTGKNFVPPLKTLYTVQDTYNYNDPTCGEMTYICWPTVAPSSAYVYKGGKKAITLVPSLKRGVIFRIKLDPTYSTTYDDAVPNRYRDVIASPDGNVLYVLFT | |||||||||||||
4 | 2nyzA | 0.13 | 0.11 | 3.93 | 1.01 | SPARKS-K | GLCNVKNKMGVPELGQEIITGRLPFPSVG-GTPVNDL---------------VRVLVVAESNTPEET-PEEEFYAYVELQTELYTFGLVVFTSTVWMIDIPKSYVDV-GMLTRATFL-------EQWPGAKVTVMIPYSSTF-TWCGELGAISEESAPQPSLSSPVC------KNSARYSTDGCTAETGMEKMSLLTPPPQQAKMNTCPCYYKYMDHL---ILADLAGLSLTSPVYVMAASKLYCALQMTSHDGVSQNVLQVRVNLVGVSLMLEGQQYRLEYF | |||||||||||||
5 | 6f1tg | 0.09 | 0.08 | 3.24 | 0.44 | FFAS-3D | ----------LTEEEKQQILHSEEFLIVERALSEQINIKLSLNRQFFDERWSKHRVVSCLDWSSQYPELLVASYNNNEDAPHEPDGVALV-----WNMKYKKTTPECQSAVMSATFAKFHTYSGQDNRSNKRTPVQRTPLSAAAHTHPVYCVNVVGTQNAHNLISISTDGKICSWSVNNFVVGSEEGSVYTHCHAAVGAVDFSHLFVTSSFDWTVSTKNNKPLYSFEDWSPTHPALFACVDGMGRLDLWNLNNDTEVPTASISVALNRVRWTHSGREIAVIYD | |||||||||||||
6 | 2bihA | 0.12 | 0.06 | 2.13 | 0.32 | HHpred | ---------------------------DDRWWKDNLQTIICKPENQQVIKISDEYEIAGFGYNGGG-VRIGRIEVSLDKGKS-WKL-ADIDYPSCLCWCFLKVPLSEARSKD----ILIRGMDERMMYWNVTSMLNNWWIREG-ESLRFEHPV-----------VAN--K-PGGWMDRVKAEGGDILNWGEV------------------------------------------------------------------------------------------- | |||||||||||||
7 | 2vowA | 0.15 | 0.14 | 4.63 | 0.72 | MUSTER | GVAEVVETF--KNPGTYS---SPVINFKIASPPGPGTPIYGPPRDFSGYNKSYSLAIGGTKWNDDTITPVSDGQ-DIWRGWTHTGKWSFFNGKATLSVQRDAQEASLKGAHPGFILFWR----PEGGPLFWAGTQDLDEGQTALPADSDTVIGHVIVQHAD----TLQGLPPKA--------HTAPAGVDTELYPMKPDSYTMYYVDSGY----ADKYVASKKLIMHPTAFKGLALNDGTAG-AFTKSITLPKTGYYMLYVANVLVDDWSVDADGKTTGEVWE | |||||||||||||
8 | 3ty1A | 0.07 | 0.05 | 1.93 | 0.93 | CNFpred | NEMMVRCGYEWTG-HPVTADGQIYTLHGK---------AGNTPASLVEVEVAYEIRIRGLVKEST---KKADLQTLTELRYVPGSNSFSLHDVLTNHA----------DYPHDYQIIYHSNFGTPILEEG----------------ARFLA------------PISSISPFNDYAKSGLKT----------------WQTYQGPTKD-----------FDEMVFNIQPLADENHQTLAAVVDKGASIQFDTR----------QLPVLTLWKNTDTQGYVTGIE | |||||||||||||
9 | 2npiA1 | 0.10 | 0.02 | 0.79 | 0.39 | HHsearch-2 | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGDNEWHKLVIPKG-SDWQIDLKAEKLIVKVNSGIV---EIFGTELAVDDEYTFQNWKFPIYAVE | |||||||||||||
10 | 4fj6A2 | 0.09 | 0.09 | 3.32 | 0.95 | Neff-PPAS | -TLLGVYDIRYNSSVDLQEKIEPRVATFKQTDGLPHGQNGVGDPSILVDEKTNTIWVVAAWTHGGNERAWWNSP-----GTPDETAQLLVKSEKTWSEPINITSQVKDPSWYFLLQGPGRGITQDGTLVFPIQFIDATRVPHLHNLARTNTTEAQVAEVEPGVLLNRDNRGGSRAVATTKDLGK---TW--TEHPSSRSALQESVCASLIKVNAKDNITGKDLLLFSNPNTTKG-------RNHITIKASLPTEHQVLLDEAEGWGYSCLSIDK-ETVGIFYE | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |