>PF09872 (254 residues) HVMEILGMARVVVKDGKVTEVGEPQLDWCPLFEKARGIKHINSEEIRKNMEFRIRDFGLF TPQRKLDMDVFVGFGASEVMMTGLNRGMLDATVTVCDGAGTVITANPRLVQGMGARISGL VETEPIPEVIAGIEQRNGIVLDPQHASIDPVQGLQKAAQIGYKKVAVSVIDALTASKLRE IESAQGLDVCIIAAHTTGLTKEHASELLKYTDIVTACASRNLREIIKPIAQVGTAVPLFA LTQKGKELLLERAK |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | HVMEILGMARVVVKDGKVTEVGEPQLDWCPLFEKARGIKHINSEEIRKNMEFRIRDFGLFTPQRKLDMDVFVGFGASEVMMTGLNRGMLDATVTVCDGAGTVITANPRLVQGMGARISGLVETEPIPEVIAGIEQRNGIVLDPQHASIDPVQGLQKAAQIGYKKVAVSVIDALTASKLREIESAQGLDVCIIAAHTTGLTKEHASELLKYTDIVTACASRNLREIIKPIAQVGTAVPLFALTQKGKELLLERAK | |||||||||||||||||||
1 | 1vc4A | 0.13 | 0.10 | 3.56 | 0.64 | SPARKS-K | ---------------------------------MRPDLSRVP-GVLGEIARKRASE----VAPYPLPEPPSVPS-----FKEALLRPGLSVIAEVKRQSP----SEGLAYARGGARAVSVLRFGGSLLDLKRVREAVDLPLLRKDF-VVDPFMLEEARAFGASAALLIVLLGELTGAYLEEARRLGLE-ALVEVH----TERELEIALEAAEVLGINNRDTAPRLGRLARKRGFGGVLVAESKAGTSLMEAALR | |||||||||||||
2 | 2v82A | 0.12 | 0.08 | 2.95 | 0.74 | FFAS-3D | -------------------------------------LRGITPDEALAHVGAVIDA-GF----DAVEIPLNSP-QWEQSIPAIVDAYGDKALI------GAGTVLKPEQVDALARGCQLIVTPNIHSEVIRRAVGYGTVCPGCAT-----ATEAFTALEAGAQALKIFPSSAFGPQYIKALKAVLPSDIAVFAV--GGVTPENLAQWIDACAGAGLGSDERTAQQAAAFV------------KAYREAVQ---- | |||||||||||||
3 | 5dqrA | 0.16 | 0.10 | 3.39 | 0.53 | HHpred | ------------------------HCSQCGLCDTYYICAFLGDMSRIESLEPVVTYFGVHQEQLYARKLKPVEGGVTTIAIEMLKSNMVEAVVCVQSDPEDVLARTPEVLAARGVKP----------------------TLSPNLNTLE------LIEASGVKRLLFCGVGC-QVQALRSVEQHLNEKLYVLGTNCVDGTRDGLDKFLKAASK----------------------------------------- | |||||||||||||
4 | 4evqA | 0.13 | 0.11 | 3.93 | 0.61 | MUSTER | ----------------GALKVG-PYSGT---YAPL-------GEAITRGLELYVQSQGGKLGGRSISFVKVDDESATELTTKLIQSEKAD-VLIGTVHSGVAAV---KIAREDG-----TIVPNAGADIITRACAPNVFRTSFANG--QIGRATGDAIKAGLKKAVTVTWKGEEVSGFKKSFTAGKGEVVKDITIAFPDVQSALAEIASLPDVYAFFSGGGALKFIKDYAAANLGIPLWGPGFLTDGVEAAAGP | |||||||||||||
5 | 3hutA | 0.12 | 0.10 | 3.46 | 0.96 | CNFpred | -------------------------------------------RVFQEAARLQLDRFNAGVGGRPVDILYADSRQARTIARAFVDDPRVVGVLGDFS--STVSMAAGSIYGKEG--MPQLSPTAAHPDYIKIS--PWQFRAITTPAF-EGPNNAAWMIGDGFTSVAVIGVTLSSAQAFRKAFELRGGAVVVNEEVP-RRFDDVIDEIEEAPQAIYLAMAEDAAPFLRALRARGSALPVYGSSALYSPKFIDLGG | |||||||||||||
6 | 3lopA1 | 0.13 | 0.05 | 1.78 | 0.38 | HHsearch-2 | ---------------------------------------------------------------------------------------------------------------------------------------------------------ITALVTIGVTRIGVLYQEDALITGVERTLKAHALAI-TAASYPRNTAGPAVDKLAADVQAIFLGATEPAAQFVRQYRARGGEAQLLGLSSIDPGILQKVAG | |||||||||||||
7 | 2dkjA2 | 0.15 | 0.13 | 4.35 | 0.63 | Neff-PPAS | QVREAVGSV---LTNKYAEGYP-------------GARYYGGCEVIDRVESLAIERAKALFG---AAWANVQPHSGSQANMAVYMAL--------MEPGDTLMGMDLAAG---------GHLTHGSRVNFSGKLYKVVSYVRPDTELIDLEEVRRLALEHRPKVIVAGASAFWDFKAFREIADEVGAYLVVDMAHFAGVAAGLHPNPLPYAHVVTSTTHKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQ--- | |||||||||||||
8 | 3i09A2 | 0.15 | 0.06 | 1.86 | 0.32 | HHsearch | ----------------------------------------------------------------------------------------------------------------------------------------------------ALKGTGSAVVKQGGKTWFFLTADYAFEKNTADVVKANGGKVLGEVRHPLSASSSFLLQASSKAQILGLANAGDTVNAIKAAKEFGITTKLAALL------------ | |||||||||||||
9 | 3ighX | 0.18 | 0.16 | 5.26 | 0.85 | SP3 | TIYTSFNPLGLVISHGKVIYAGDSE----VAKKIVEGGEIVSIEELIQRLKRG-------------KGRIIFGFGWQDELGEWPTRKELNAIVFIYRKCFHVAVANDKMLELLNDEDTGIIKEKSLEEARKVINERV---LTVEDYVYYIKRAQEHLLDLGVKSVSFMSVNEKALRALFYLEREGKLSINVFAYV----TPEVLDKLESITSGQLVMEREELIRITEKARSLGLDVAIHAIGDKALDVALDVFE | |||||||||||||
10 | 2v81A | 0.11 | 0.08 | 2.87 | 0.84 | PROSPECTOR2 | ---QWQTKLPLIAI-----------------------LRGITPDEALAHVG-AVIDAGFDLNSP----------QWEQSIPAIVDAYGDKALIGAGTV------LKPEQVDALARGCQLIVTPNIHSEVIRRAVGYGTVCPG-----CATATEAFTALEAGAQALKIFPSSAFGPQYIKALKAVLPSDIAVFAV--GGVTPENLAQWIDACAGAGLGSDERTAQQAAAFV---------------KAYREAVQL | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |