>PF09743 (261 residues) QVLLSERNCIEIVTKLIAEKQLEVVHTLDGKEYVTPAQISREIRDELHVCGGRVNIVDLQ QVINVDLLHIENRANDIVKSEKTIQLVLGQLINQSYLDQLAEEINDKLQETGQVTISELC KAYDLPGDFLIQALSRRLGRIIHGQLDQENRGVIFTEAFVSRHRARIRGLFTAITRPTPV SNLITRYGFQEHLLYSVLEELVNSGRLKGTVVGGRQDKAVFVPDIYARTQSNWVDSFFKQ NGYLEFDALYRLGIPDPAGYI |
![]() | |
|
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | QVLLSERNCIEIVTKLIAEKQLEVVHTLDGKEYVTPAQISREIRDELHVCGGRVNIVDLQQVINVDLLHIENRANDIVKSEKTIQLVLGQLINQSYLDQLAEEINDKLQETGQVTISELCKAYDLPGDFLIQALSRRLGRIIHGQLDQENRGVIFTEAFVSRHRARIRGLFTAITRPTPVSNLITRYGFQEHLLYSVLEELVNSGRLKGTVVGGRQDKAVFVPDIYARTQSNWVDSFFKQNGYLEFDALYRLGIPDPAGYI | |||||||||||||||||||
1 | 1lvaA | 0.11 | 0.09 | 3.17 | 1.15 | FFAS-3D | ---------------------------------------EKILAQIIQEHREGLDWQEAATRASLSLEETRKLLQSAAAGQVTLLRVENDAISTERYQAWWQAVTRALEERPGLAREELRSRYRLPARVYQALLEEWSREGRLQLA----ANTVALAGFQKKLLKDLEDKYRVSRQPPSFKEVAGSFNLDPSELEELLHYLVREGVL------VKINDEFYWHRQALGEAREVIKN-LASTGPFGLAEARDLGSSR----- | |||||||||||||
2 | 1lvaA | 0.11 | 0.08 | 3.07 | 1.02 | HHpred | -------------------------------------SPEKILAQIIQEHREGLDWQEAATRASLSLEETRKLLQSA-A-AGQVTLLRLYAISTERYQAWWQAVTRALEERPGLAREELRSRYFSPARVYQALLEEWSRERL--QLA---ANTVALAETQKKLLKDLEDKYRVSWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLV-KINDE-----FYWHRQALGEAREVIKN-LASTGPFGLAEARDLGSSRKYV-- | |||||||||||||
3 | 1lvaA | 0.11 | 0.09 | 3.29 | 1.12 | HHsearch | ---------------------------------GSP---EKILAQIIQEHREGLDWQEAATRASLSLEETRKLLQSA-A-AGQVTLLDLYAISTERYQAWWQAVTRALEERPGLAREELRSRYFSPARVYQALLEEWSREG-RLQLA---ANTVALSETQKKLLKDLEDKYRVSWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLVK---IN--DEFYWHRQALGEA-REVIKN-LASTGPFGLAEARDLGSSRKYVL- | |||||||||||||
4 | 5lzbz | 0.14 | 0.11 | 3.95 | 1.10 | SP3 | RRGKRKPEYLQWLASLARAQS------------------DADALSVHLERGA-VNLADFAWARQLNGEGMRELLQQ-----PGYIQAGYSLLNAPVAARWQRKILDTLATYHEPGRERLRRMAMEDEALVLLLIEKMRESSHHGWLHLPDHKAGFS-EEQQAIWQKAEPLFGDE--PWWVRDLAKETGTDEQAMRLTLRQAAQQGII----T--AIVKDRYYRNDRIVEFANMIRDLDQECGSTCAADFDRLGVG------ | |||||||||||||
5 | 1lvaA | 0.13 | 0.10 | 3.61 | 0.80 | SPARKS-K | ------------------------------------GSPEKILAQIIQEHREGLDWQEAATRASLSLEETRKLLQSA--AAGQVTLLRLYAISTERYQAWWQAVTRALEEFHGLAREELRSRYRLP-ARVYQALLEEWSREGRLQLAAN---TVALSETQKKLLKDLEDKYRVSRQPPSFKEVAGSFNLDPSELEELLHYLVREGVL---VKINDE---FYWHRQALGEAREVIKNLASTGPFGLAEARDALGSSRVLPLL | |||||||||||||
6 | 2pjpA | 0.13 | 0.05 | 1.87 | 0.98 | FFAS-3D | -----------------------------------QQAIWQKAEPLF--GDEPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIVKDRYYRNDRIVEFANMIRDLDQECGSTCAADFRDRLGVGRKLAIQILEYFDRIGFTRRR------------------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 5lzbz | 0.17 | 0.09 | 3.03 | 0.57 | HHpred | LPMEDEALVLLLIEKMRESGDIGWLHLPDHKAGFSEEQIWQKAEPLFGD--EPWWVRDLAKETGTDEQAMRLTLRQAAQQ-GIITIVKDRYYRNDRIVEFANMIRDLDQECGSTCAADFRDRLGVGRKLAIQILEYRIGFTRRDHLL------------------------------------------------------------------------------------------------------------------ | |||||||||||||
8 | 5cwmA | 0.12 | 0.10 | 3.56 | 0.67 | MUSTER | ----DPEDELKRVEKLVKE-AEELL--RQAKEKGSEEDLEKALRTAEEAAREAKKVLEQAEKEG-DPEVALRAVELVVRVAELLLRIAKESGSEEALERALRVAEEAARLA--KRVLELAEKQG-DPEVALRAVELVVRVAELLLRIAKESG---SEEALERALRVAEEAARLAKR---VLELAEKQG-DPEVARRAVELVKRVAELLERIARESGS-------EEAKERAERVREEAREL----QERVKELRER------ | |||||||||||||
9 | 1lvaA | 0.15 | 0.12 | 4.12 | 0.93 | CNFpred | RASLSLEETRKLLQSMAAAGQVTLLRVENDLYAISTEAWWQAVTRALEEF-PGLAREELRSRYFLPARVYQALLEEWSRE-GRLQLAANTVAL-ETQKKLLKDLEDKYRVSQPPSFKEVAGSFNLDPSELEELLHYLVR---EGVLVKINDEFYWHRQALGEAREVIKNLAST--GPFGLAEARDALGSSRKYVLPLLEYLDQVK---FTRRVG--DKRVVVGN------------------------------------- | |||||||||||||
10 | 1lvaA | 0.11 | 0.09 | 3.30 | 0.78 | HHsearch-2 | ---------------------------------GSPE---KILAQIIQEHREGLDWQEAATRASLSLEETRKLLQSA-A-AGQVTLLDLYAISTERYQAWWQAVTRALEERPGLAREELRSRYFSPARVYQALLEEWSREG-RLQLA---ANTVALSETQKKLLKDLEDKYRVSWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLV---KIN--DEFYWHRQALG-EAREVIKN-LASTGPFGLAEARDLGSSRKLPLL | |||||||||||||
|
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |