>PF09552 (288 residues) RKIYKTGQTRGASQNEIYQNRVSRNSTVLIPYQWWEKCKEPYPGAEYENGFIVLIDPDWY SDHPHADKTLAAKGIVLGVNAVLHFQQRAQWDRYDLRLGDLLPNGMPFTEPTQRISPIGG TVLARIHGTTAEGDKRSQIRVGFNETNLRGAGIRVYEYASTENLEKTRLQLESYYWLAEE SLEMAIDWGMSPKDARKRRDETLQHAHEAGLLEYQRLQAVRIVDEHNVTICPFCLERISA STFYERSEQAVGRETWDLTTTEISLFHIEELRVGALQHRPYNLGWGHH |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | RKIYKTGQTRGASQNEIYQNRVSRNSTVLIPYQWWEKCKEPYPGAEYENGFIVLIDPDWYSDHPHADKTLAAKGIVLGVNAVLHFQQRAQWDRYDLRLGDLLPNGMPFTEPTQRISPIGGTVLARIHGTTAEGDKRSQIRVGFNETNLRGAGIRVYEYASTENLEKTRLQLESYYWLAEESLEMAIDWGMSPKDARKRRDETLQHAHEAGLLEYQRLQAVRIVDEHNVTICPFCLERISASTFYERSEQAVGRETWDLTTTEISLFHIEELRVGALQHRPYNLGWGHH | |||||||||||||||||||
1 | 4l0kA | 0.15 | 0.07 | 2.45 | 1.47 | HHsearch-2 | ----------------------------------------------------------------------------------------------------MELCHK---TVKSRYSKHFPHKCQLPLGHSGKCLEAAKIKFNLDMQSLPELKIREK-AADYDSCIDVARKLTWLAYQLHGAPI-------PDSF-------TKNYLEEF----------FGPM-VAGSTNCEICKLPLTIDLFSEA---------------AVETAHKTPR-----LHNAENVGFAHR | |||||||||||||
2 | 4l0kA | 0.15 | 0.07 | 2.44 | 1.88 | HHsearch | ----------------------------------------------------------------------------------------------MELC------HK---TVKSRYSKHFPHKCQLPLGHSGKDDD--ILKFNLDMQSLPELKIREK-AADYDSCIDVARKLTWLAYQLHGAPI-------PDSF-------TKNYLEEFF----------GPM-VAGSTNCEICKLPLTIDLFSEA---------------AVETAHKTPR-----LHNAENVGFAH- | |||||||||||||
3 | 4fyeA2 | 0.13 | 0.10 | 3.61 | 0.72 | SPARKS-K | EPVPNQHLAYGYPGEQVFKDPMLDGKQVVVVNS--QYDKHGRPVTG-RDTLIHRFKA------PNSKE---------GEEQFIMYIPTKRQQRL------MGKDESDLVLGNS----SMARMIAGTRH---SDGTVTIHHDSFSGP-----GARMPDFADDYKKLAIKAVTLINQEEVIQTLAQRQIDRMTNEDLWNRAQLIKLYVEHNPL---------------SVTECVTAGQRVNQKEQFEYVRQMMG------SKAKITIQTGSNTEVEAVGYQARMSSWGVN | |||||||||||||
4 | 1tjlA | 0.16 | 0.06 | 1.84 | 0.52 | FFAS-3D | ------------------------------------------------------------------------------------------------------------------------------------------------------------EYMNEAQLAHFRRILEALRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIVEDEDFGYCESCGVEIGIRRLEKTLAEIREKQ---------------------------------- | |||||||||||||
5 | 4l0kA | 0.15 | 0.07 | 2.33 | 0.80 | HHpred | ------------------------------------------------------------------------------------------------------------KTVRTAYSKHFPHKCQLPLGHSGKDDD--ILKFNLDMQSLPELKIREK-AADYDSCIDVARKLTWLAYQLHGAPI-------PDSF-------TKNYLEEF----------FGPM-VAGSTNCEICKLPLTIDLFSEA---------------AVETAHKTPRL-----HNAENVGFAHR | |||||||||||||
6 | 3ed3A | 0.12 | 0.09 | 3.33 | 0.54 | MUSTER | ---------HNDSDPHIFDKAINTNYTSLVEFGHCKKLSSTFRKKRLDGVVQVAA-----CDLNKNKALCAKYDVN-GFPTLMVFRPPKI-EVYARTLAPIVD-LSRIRSYVKKFVRID-TLGSLL-----RKSPKLSVVLFSKQDKIS------------PVYKSIALDWLDFYSISNKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDKSKL----VVADKDKFW-----NSINKNDISKFLRDTFSITPNEGPFSRRSEY-IAYLKTGK------------- | |||||||||||||
7 | 4a15A | 0.13 | 0.08 | 2.75 | 0.60 | CNFpred | ------------------------------PYESMKAA--------LPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAH--------NLPDIGR--------------SIGSFRISVESLNR-AYGDPELSQKIH---------------VSDLIEMIRSALQSMVS-FQEFMEYMRIMNRSEREIRSLLNYLYLFGEY----VENEKEKV-----GKVPFSYCSSVASRIIAFSDQD-----------EEKYAAILSPE------------------- | |||||||||||||
8 | 1vt4I3 | 0.08 | 0.04 | 1.49 | 0.66 | HHsearch-2 | ------------------------------EYALHRSIV--------------------------------------------------DHY--------------------------------NIPKTFDS-------------DDLIPP--YLDQYFYSHHLKNEHPERMTLFRMVFLDFRFLEQSGSILNTLQQLKFYKPYICDN-----DPKYERLAILDFPKIEENLICSKYTDLLRI---ALM--------------------AEDEAIFEEAHKQVQRGGG | |||||||||||||
9 | 3tnfB | 0.09 | 0.09 | 3.44 | 0.87 | Neff-PPAS | QENIKKGEELEKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMEAFSKDSEKLTQLMEKHKGDEKTVQSLQREHHDIKAKLLHDAHTGKKSYVNEKGNPVSSLKDAHLAINKDQEVVEHEGQFYLLQKGAIKNNPAALEKAQKDYSQSKHDLATIKMEALIHKLSLEMEKQLETINNLIMSPKENEEATKLLHKHNGLNLANLQDMLAVHRKEKSFFNEKGEEVSLNDAHYVIGKDQQLFNLGGKFYPIHKEQKILEKDGKFGEDWESIKDSPE | |||||||||||||
10 | 5goxA | 0.15 | 0.07 | 2.45 | 0.53 | HHsearch | ---------------------------------------------------------------------------------------------------------------------------KEINQ----------TRD-----RLAKL---NKELASEQNKNHINNELKRKEEQLSSYEDKLFVCGSQESDLDRLKEEIEKSSKQRA-LAGATAVYSQFITQTNQSCCPVCQRVFQTEEVISDLQSKLRL-APDLKKKEKRRDE-LGLVP-RQSIID--LK-EK- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |