>PF09328 (260 residues) REPGMLYTLSCKHESWISIAKFLMDDVPLLLKSEDVKDIQMVLSIIVTSLPSKFEEFIKW IAEIRRREDGGPSLSPEEKARLGVKEEVLKQVQETGLFKHVIRFMSTSCSIHSPTSGDGD TLPDIAANVCCQGAEILGGKISSSAEYCCHETCLKCCKAEDEKPVTMVYGTVVNGNSEQG VDVLIPSTRKSCCTCSSLSNSIRMHPASTDVLTVLLLSLPSTTWSDIKDERLLREINSLV SVENLPTLLQEEVLHLRRQL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | REPGMLYTLSCKHESWISIAKFLMDDVPLLLKSEDVKDIQMVLSIIVTSLPSKFEEFIKWIAEIRRREDGGPSLSPEEKARLGVKEEVLKQVQETGLFKHVIRFMSTSCSIHSPTSGDGDTLPDIAANVCCQGAEILGGKISSSAEYCCHETCLKCCKAEDEKPVTMVYGTVVNGNSEQGVDVLIPSTRKSCCTCSSLSNSIRMHPASTDVLTVLLLSLPSTTWSDIKDERLLREINSLVSVENLPTLLQEEVLHLRRQL | |||||||||||||||||||
1 | 4btgA | 0.15 | 0.13 | 4.28 | 0.65 | SPARKS-K | LQFTRTFSASMTSELLWEYARLFFQYAQAG----GALSVDELVNQFTEYNPEIWRKLTAYITGSAIKADAVGKVPPTA---------ILEQLREHELFHITTDFVCHVLSPLGFILPDAATYPNFYALVDCVRASDLR-----------RMLTALSSVDSKMLQ-------ATFKAKGALAPALISQHLANAATTAFERSRGNFDAVVSSVLTILGRLWSPSTPKELDPSA------RLRNTNGIDQLRSNLALYQDMVK | |||||||||||||
2 | 2qguA | 0.17 | 0.11 | 3.55 | 0.71 | FFAS-3D | ----------------QATVKTAVDDVLATIKGDPDGNLQKVFQLVDQKIVPRAD--FKRTTQIAGRF--WSQATPEQQQQIQ---DGFKSLLIRTYAGALANVRNQTVAYKPFRAAADDT-----------------------------DVVVRSTVNNNGEPVALDYRVEKSPNGWKVYDINI---------------------------------------SGLWLETYKNQFADVIGVGGLVQFLDERNAQLAK-- | |||||||||||||
3 | 5j5vC | 0.14 | 0.06 | 2.11 | 0.36 | HHpred | -------------------------------------TLRKLIGNINTKEPEQQSPLELWFERIIDVPLE--KLTVED-LCRAIR----QNLCIDQL-PRVLEV--------------------------------LTK---------------------------------------------------------EPLA-GEYYD--GELIAAL-STIKGEDLKDQ--KSTFTQIRQLINQLDINDDLRKDILKIN--- | |||||||||||||
4 | 5cwmA | 0.15 | 0.12 | 4.16 | 0.66 | MUSTER | -----------DPEDELKRVEKLVKEAEELLRQAKEKGSEEDLEKALRTA-EEAAREAKKVLEQAEKEGDPEVALRAVELVVRVAELLLRIAKESGALERALRVAEEAARLAKRVLEGDPEVALRAVELVVRVAELLLRIAKESGSEEALERALRVAEEAARLAKRVLE-LAEKQGDPEVARRAV---------------------ELVKRVAELLERIARES----GSEEAKERAER---VREEARELQERVKELRER- | |||||||||||||
5 | 3w3tA | 0.12 | 0.10 | 3.41 | 0.83 | CNFpred | ---------------ALELLTVFSENAPQMCKS--QNYGQTLVMVTLIMMTEVSDDAAEWIESDDTDDE----EEVTYDHARQALDRVALKLGGEYLAAPLFQYLQ--------QMITSTEWRERFAAMMALSSAAEGCADVLIEIPKILDMVIPLIND----PHPRVQYGCCN-----VLGQISTDFSPFIQRT-----------AHDRILPALISKLTSECTSRVQAAAALVNFSEFASKDILEPYLDSLLTNLLVLL | |||||||||||||
6 | 2pffB | 0.15 | 0.14 | 4.67 | 0.56 | HHsearch-2 | TRPLTLSHGSLEHVLLVPTASQLQEQFNKLPEPDEPTTPAELVGKFLGYEPSKVGQFDQVLLCLTEFEN--CYLEGND--IHALAAKLLQENDTTLVKNYITARIMAKRPFDKSNSALFRAVG----EGNAQLVAIFGGQGNTDDYFE-ELRLSELIRTTLDAEKVFT----------QGLNILEPSNTPDKDLLSIPISCPLIIQLAHYVVTAKLLGFTPGEWESFFVSVRVLFFIGVRCYESLPPSILEDSLENNEGV | |||||||||||||
7 | 5cwmA | 0.16 | 0.13 | 4.37 | 0.77 | Neff-PPAS | -----------DPEDELKRVEKLVKEAEELLRQAKEKGSEEDLEKALRTA-EEAAREAKKVLEQAEKEGDPEVALRAVELVVRVAELLLRIAKESEALERALRVAEEAARLAKRVLEGDPEVALRAVELVVRVAELLLRIAKES----------------GSEEALERALRVAEEAARLAKRVLELAEKQGD--------------PEVARRAVELVKRVAELLERIARESGSEEAKERARVREEARELQERVKELRER- | |||||||||||||
8 | 1e9sF1 | 0.10 | 0.03 | 1.13 | 0.36 | HHsearch | -------GKTDEAEEWASYGRLLLRETAKKLALIGTPSMRELFHWTTIATFDDLRGFLEGTL-------AESLFAGASKALTSARFVLSDK------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 3hjbA3 | 0.11 | 0.09 | 3.37 | 0.65 | SP3 | --AMLKNINPTQTQAWKALTAHFESAQDMDLKAQDSERFAKYSARFGQDIAETMQHLFALAKETDAMFKGDRAVYDNFVELLAGAHEMDQHFVNTPILALIGIWYNNFHGAESAILPYDQYLHRFAAYFQQGNMESN-GKYVDRNG----------NPVTYQTGPIIWGEPGTNGTKLIPCDFIAPAVSHNLV------------GDHHQKLMSNFFAQTEALAFGKSAQAVQAELEKAGKS-------AAEIAALVPFK | |||||||||||||
10 | 5vchA3 | 0.07 | 0.07 | 2.77 | 0.78 | PROSPECTOR2 | KEGEYPKGVPSGSYVDASALAVIQTVREVSLNEEVETSVISVFQDLSEGDSTHLDQLCREALSVLKGEHACQTILDASETEATLLDVALDTNLVGGFAQVFTTAKPVILQLCQSGRDENPFIQELLEALASYGVGLLIEYSSFDVSAIYSPSVADEKNLATEDDEATKEARILKHQNLVPLEHTIPALLSHLPFNTAFEQNSTIINEAPKVIAIFATVFNLEKRKQFQSEEIKQQVIELLKNQQFNGAVAQNPVLAQVIA | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |