>PF08907 (286 residues) RDLAWVILAPPMLSDTPWPQRHPLAGSDWVQAPERLQHWLRQLDRDSYGLLHWLAQARTR RLGLYYERLWQFAIQHAPGIELIAANMPIRREGHTLGELDMLLRDRDGVHHLELAIKLYL GPQNGDGHDAAQWLGPGCHDRLDRKLAHLCQHQLPISARPESREVLEALDIREFSAHLWL GGYLLYPWPGKATPPRGAHPQHLRGRWLHQKDWAEFAAQSPPGRWQPLPRHAWLAPAHYP AEQTWSAEQLDAWLSDLEPQAPAQLLVRLVKNAQGDWEEAERLFLV |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | RDLAWVILAPPMLSDTPWPQRHPLAGSDWVQAPERLQHWLRQLDRDSYGLLHWLAQARTRRLGLYYERLWQFAIQHAPGIELIAANMPIRREGHTLGELDMLLRDRDGVHHLELAIKLYLGPQNGDGHDAAQWLGPGCHDRLDRKLAHLCQHQLPISARPESREVLEALDIREFSAHLWLGGYLLYPWPGKATPPRGAHPQHLRGRWLHQKDWAEFAAQSPPGRWQPLPRHAWLAPAHYPAEQTWSAEQLDAWLSDLEPQAPAQLLVRLVKNAQGDWEEAERLFLV | |||||||||||||||||||
1 | 5y4gA | 0.07 | 0.05 | 2.14 | 0.61 | SPARKS-K | ------------------------------TIVNRIRTDVVNVAKSF--------GAEYSE--AVIDQIFQGFGEKFTNTGFAIRVQNKRNQK---VDCNIRYGEAKIAYGADFDIKIWHLPKI---VPVEEAFKIPSLP------KSVNAH----------IDFFKKYHLD----ALCALTVDY--------------RNKSTNLYFDTQFYKNILQSQNCPEIAVTPGIERMCYTAFVNRETVINPVLKKFAQEALLDNPGFLVGWSFGPDAGTYIKIDVDYHG | |||||||||||||
2 | 2ewfA3 | 0.11 | 0.07 | 2.41 | 0.68 | FFAS-3D | ---------------------------------EEVIDLLEVYHEKKNVIEEKIKARFIANKNTVFEWLTWNGFIILGNALEYKNNFVIDEELQPVNQPDMEIIYEDFIVLGEVTT-------------------SKGATQFKMESEPVTRH------YLNKKKELEKQGVEKELYCLFIA--------------PEINKNTFEEFMLSLKQFKKLIEKGRRLSSYDIKNTQI-------------KAGLEETLNNWVVDKE------------------------ | |||||||||||||
3 | 1xmxA | 0.17 | 0.10 | 3.44 | 0.43 | HHpred | -TLNYLATTCR--KEQK-LD-VELSDKQ--QGYRELNLLLSDLVEANEEARRFA-------NGEWLETLVHSTVKQIPTIQDRSLNVQVYRQREVRNELDVATVVNNKLHIIECK--------TK------GMRD--GDDTL-YKLESLRDL----------------LGG-LQARAMLVS---FRPLR------H--------------NDITRAEDL--GL--ALIG----------P--DELK--DLKTHLTQWFKAAG------------------------ | |||||||||||||
4 | 5jvkA2 | 0.09 | 0.07 | 2.82 | 0.59 | MUSTER | ------------IIDEERPLD---VHPPKDNDYSKTFRLIRMA---DLAWEHVEPAKGKYVMPEHMYQFVSASEKE--GIKPLIV-FGYANAIAY---LAYAVEMGNRVTEWELW------NYADPVKDYLPL--------LKVVYPTVKKV-AGGGPGGAFIIPVLDAGGVDFQDGYSI----PYMAPNTPDFGYAGTGGPIPAVNIPWPYLKKISEENLRSDKKELS---WVGWNSTTNLDIEQAAYLARTYLLSRRHYPGVFWYDFQNDGDTPDNIEHNFGLL | |||||||||||||
5 | 4ld7A | 0.12 | 0.08 | 2.85 | 0.81 | CNFpred | -----------------------------------TREVLGRLSRLDPTFD-----------LRLFDYFDSQFSLTTSEANLAASKLIKQR--RQSKVIAFDLKD------GAIIPKAYFFLK-----GKSLASGIPVQDVAFNAIESIAPKQIESP-LRVLRTFVTKLF--TVTSDVFILAVDCIVPE-----------KSRIKLYVADLSLATLR-------------EFWTLGG---SVTDSATMKGLEIAEELWRQLPLVVNYELSSG---SATPKPQLYLP | |||||||||||||
6 | 2wj0A | 0.14 | 0.06 | 2.02 | 0.85 | HHsearch-2 | ------------------------------------------------------------SKGTRFERDLLVELWKA-GFAAIRVAGSG---VSPFPCPDIVAGNGRTYLAIEV--KMRK----E--L--PLYLSA-------DEVEQLVTFA-------------RGFG---AEAYVALKKWRFFPVQMLERTEFKIDESVYLG--LEIAEVAGKF--------------------------------------------------------------------- | |||||||||||||
7 | 2obfB | 0.07 | 0.06 | 2.41 | 0.70 | Neff-PPAS | ---------------------------DSAPGQAAVASAYQRFE-PRAYLRNNYAPPNPNGVGPWALRCLAQTFATGEV---------------------------SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKRQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSALASFQRALDHITTLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTYIMPAHLQTGVDDVKGVFFA | |||||||||||||
8 | 2wj0A | 0.14 | 0.06 | 2.02 | 1.10 | HHsearch | ------------------------------------------------------------SKGTRFERDLLVELWKA-GFAAIRVAGSG---VSPFPCPDIVAGNGRTYLAIEV--KMRK----E--L--PLYLSA-------DEVEQLVTFA-------------RGFG---AEAYVALKKWRFFPVQMLERTEFKIDESVYLG--LEIAEVAGKF--------------------------------------------------------------------- | |||||||||||||
9 | 3wadA | 0.09 | 0.08 | 2.91 | 0.66 | SP3 | PDNVQAISDSG-LTAVPVGNDLNIMAALTLNETRPEKLTWQYIHDVFAQYSQIYEYMAD---STMTADLVAHARQWQP---------------------DLVIWDALTYAGPIAAAPHVRMLFGLDQWGRMR-------DHFNRLTGERAADDRHDPLADWLATKGEPHGVAFTESTTLAV----APPWMSFPSEQPALSMRHL-PFNGPAVLPDWLREAPSRPRVC------LTLGLTLRELNVTLADFVNAVAD----IDADVVATFSAEQVAEIGDLPDNVRA | |||||||||||||
10 | 4tlxA | 0.07 | 0.07 | 2.74 | 0.87 | PROSPECTOR2 | PTLAVALEWHQGMLLPAAKMQVSFLKDLATFRNPASRFSFVSFLHERGRLVRFANNHDFFPTRREFHDYLEWAESKLAHE--VSYDSEVTAPGRPVDSVLVDVSTPEATR--TVEARNIVISTGLVPRMPAGVQSDEFVWHSSRFLDHFRDRDPRSLRREIVRFLHDNRPDT--------VVHAIMPSYGYVVADNTPFANQ----IFDPAAVDDYFDGSKQAKDAFWRYHRNTNYSVVDDEVIRDLYRRGYDDEVAGAPRADDTRVTVYSMAREESYDLDGIYLQ | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |