>PF08491 (273 residues) APLTIVCDGCFSNLRRALCSPKVDVPSCFVGLVLENCQLPHANHGHVVLANPSPILFYPI SSTEVRCLVDVPGQKVPSIANGEMAKYLKTVVAPQIPPEIYDSFIAAIDKGSIRTMPNRS MPAAPHPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLRNLHDASALCKYLE SFYTLRKPVASTINTLAGALYKVFSASPDQARNEMRQACFDYLSLGGVFSNGPIALLSGL NPRPLSLVAHFFAVAIYGVGRLMLPLPSPKRMW |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | APLTIVCDGCFSNLRRALCSPKVDVPSCFVGLVLENCQLPHANHGHVVLANPSPILFYPISSTEVRCLVDVPGQKVPSIANGEMAKYLKTVVAPQIPPEIYDSFIAAIDKGSIRTMPNRSMPAAPHPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLRNLHDASALCKYLESFYTLRKPVASTINTLAGALYKVFSASPDQARNEMRQACFDYLSLGGVFSNGPIALLSGLNPRPLSLVAHFFAVAIYGVGRLMLPLPSPKRMW | |||||||||||||||||||
1 | 6c6nA | 0.46 | 0.45 | 13.24 | 2.17 | SPARKS-K | APLTVVADGLFSKFRKSLVSNKVSVSSHFVGFLMKNAPQFKANHAELILANPSPVLIYQISSSETRVLVDIRGE-----MPRNLREYMVEKIYPQIPDHLKEPFLEATDNSHLRSMPASFLPPSSVKKRGVLLLGDAYNMRHPLTGGGMTVAFKDIKLWRKLLKGIPDLYDDAAIFEAKKSFYWARKTHSFVVNILAQALYELFSATD-DSLHQLRKACFLYFKLGGECVAGPVGLLSVLSPNPLVLIGHFFAVAIYAVYFCFKSEPKPRALL | |||||||||||||
2 | 6c6nA | 0.46 | 0.45 | 13.24 | 2.97 | FFAS-3D | APLTVVADGLFSKFRKSLVSNKVSVSSHFVGFLMKNAPQFKANHAELILANPSPVLIYQISSSETRVLVDIRGEMPRN-----LREYMVEKIYPQIPDHLKEPFLEATDNSHLRSMPASFLPPSSVKKRGVLLLGDAYNMRHPLTGGGMTVAFKDIKLWRKLLKGIPDLYDDAAIFEAKKSFYWARKTSHFVVNILAQALYELFSATD-DSLHQLRKACFLYFKLGGECVAGPVGLLSVLSPNPLVLIGHFFAVAIYAVYFCFKSEPKPRALL | |||||||||||||
3 | 6c6nA | 0.47 | 0.46 | 13.34 | 10.82 | HHpred | APLTVVADGLFSKFRKSLVSNKVSVSSHFVGFLMKNAPQFKANHAELILANPSPVLIYQISSSETRVLVDIRG-EMPR----NLREYMVEKIYPQIPDHLKEPFLEATDNSHLRSMPASFLPPSSVKKRGVLLLGDAYNMRHPLTGGGMTVAFKDIKLWRKLLKGIPDLYDDAAIFEAKKSFYWARKTHSFVVNILAQALYELFSATDD-SLHQLRKACFLYFKLGGECVAGPVGLLSVLSPNPLVLIGHFFAVAIYAVYFCFKSETKPRALL | |||||||||||||
4 | 6c6nA | 0.47 | 0.46 | 13.34 | 1.56 | MUSTER | APLTVVADGLFSKFRKSLVSNKVSVSSHFVGFLMKNAPQFKANHAELILANPSPVLIYQISSSETRVLVDIRGEMPRN-----LREYMVEKIYPQIPDHLKEPFLEATDNSHLRSMPASFLPPSSVKKRGVLLLGDAYNMRHPLTGGGMTVAFKDIKLWRKLLKGIPDLYDDAAIFEAKKSFYWARKTHSFVVNILAQALYELFSAT-DDSLHQLRKACFLYFKLGGECVAGPVGLLSVLSPNPLVLIGHFFAVAIYAVYFCFKSEPWPRALL | |||||||||||||
5 | 3rp6A | 0.16 | 0.14 | 4.51 | 1.48 | CNFpred | GDLLIAADGSHSALRPWVLGFTPQRRYAGYVNWNGLVEIDEGDQWTTFVGEGKRVSLMPVSAGRFYFFFDVPLPAGLAEDRDTLRADLSRYFA-GWAPPVQKLIAALDP-QTTNRIEIHDIEFSRLVRGRVALLGDAGHSTTPDIGQGGCAAMEDAVVLGAVFRQTR------DIAAALREYEAQRCDRVRDLVLKARKRCDITHGKDMQLTEAWYQELREE--TGERIINGMCDTILSGPLG------------------------------ | |||||||||||||
6 | 6c6nA | 0.46 | 0.45 | 13.24 | 1.19 | HHsearch-2 | APLTVVADGLFSKFRKSLVSNKVSVSSHFVGFLMKNAPQFKANHAELILANPSPVLIYQISSSETRVLVDIRGEM-----PRNLREYMVEKIYPQIPDHLKEPFLEATDNSHLRSMPASFLPPSSVKKRGVLLLGDAYNMRHPLTGGGMTVAFKDIKLWRKLLKGIPDLYDDAAIFEAKKSFYWARKTSSFVVNILAQALYELFSATD-DSLHQLRKACFLYFKLGGECVAGPVGLLSVLSPNPLVLIGHFFAVAIYAVYFCFKSEPWPRALL | |||||||||||||
7 | 6c6nA | 0.46 | 0.45 | 13.24 | 2.44 | Neff-PPAS | APLTVVADGLFSKFRKSLVSNKVSVSSHFVGFLMKNAPQFKANHAELILANPSPVLIYQISSSETRVLVDIRGEMPRN-----LREYMVEKIYPQIPDHLKEPFLEATDNSHLRSMPASFLPPSSVKKRGVLLLGDAYNMRHPLTGGGMTVAFKDIKLWRKLLKGIPDLYDDAAIFEAKKSFYWARKTHSFVVNILAQALYELFSATD-DSLHQLRKACFLYFKLGGECVAGPVGLLSVLSPNPLVLIGHFFAVAIYAVYFCFKSEPKPRALL | |||||||||||||
8 | 6c6nA | 0.47 | 0.45 | 13.24 | 1.86 | HHsearch | APLTVVADGLFSKFRKSLVSNKVSVSSHFVGFLMKNAPQFKANHAELILANPSPVLIYQISSSETRVLVDIRGEM-----PRNLREYMVEKIYPQIPDHLKEPFLEATDNSHLRSMPASFLPPSSVKKRGVLLLGDAYNMRHPLTGGGMTVAFKDIKLWRKLLKGIPDLYDDAAIFEAKKSFYWARKTSSFVVNILAQALYELFSATD-DSLHQLRKACFLYFKLGGECVAGPVGLLSVLSPNPLVLIGHFFAVAIYAVYFCFKSEPWPRAL- | |||||||||||||
9 | 2qa1A | 0.17 | 0.15 | 5.08 | 1.89 | PROSPECTOR2 | AAYLVGCDGGRSSVRKAAGFDFPGTAATMEMYLADIKGVELQPRMIGETLPGGMVMVGPLPGGITRIIVCERGTP-PPPSWHEVADAWKRLTGDDIAH---------AEPVWVSAFGNATRQVTEYRRGRVILAGDSAHIHLPAGGQGMNTSIQDAVNLGWKLGAVVNGTAT---EELLDSYHSERHAVGKRLLMNTQAQGLLFLSG--PEVQPLRDVLTELI-QYGEVARHLAGMVSGLEITDNPRLRARAAAWLPMALERWFGAPLTG--- | |||||||||||||
10 | 6c6nA | 0.47 | 0.45 | 13.01 | 2.62 | SAM | APLTVVADGLFSKFRKSLVSNKVSVSSHFVGFLMKNAPQFKANHAELILANPSPVLIYQISSSETRVLVDIRGEM-----PRNLREYMVEKIYPQIPDHLKEPFLEATDNSHLRSMPASFLPPSSVKKRGVLLLGDAYNMRHPLTGGGMTVAFKDIKLWRKLLKGIPDLYDDAAIFEAKKSFYWARKTSSFVVNILAQALYELFSATD-DSLHQLRKACFLYFKLGGECVAGPVGLLSVLSPNPLVLIGHFFAVAIYAVYFCF---------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |