>PF08474 (252 residues) YRNNVPTTTPRSNLAKELEKYSKTSFEYNSYDNHTYGKRAIAPKVQTRDISPKGYDDAKR YCKNASPSSSTTSSYAPSSSSNLSCGGGSSASSTCSKSSFDYTHDMEAAHMAATAILNLS TRCREMPQNLSTKPQDLCTARNPDMEVDENGTLDLSMNKQRPRDSCCPVLTPLEPMSPQQ QAVMSSRCFQLSEGDCWDLPVDYTKMKPRRVDEDEPKEITPEDLDPFQEALEERRYPGEV TIPSPKPKYPQC |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | YRNNVPTTTPRSNLAKELEKYSKTSFEYNSYDNHTYGKRAIAPKVQTRDISPKGYDDAKRYCKNASPSSSTTSSYAPSSSSNLSCGGGSSASSTCSKSSFDYTHDMEAAHMAATAILNLSTRCREMPQNLSTKPQDLCTARNPDMEVDENGTLDLSMNKQRPRDSCCPVLTPLEPMSPQQQAVMSSRCFQLSEGDCWDLPVDYTKMKPRRVDEDEPKEITPEDLDPFQEALEERRYPGEVTIPSPKPKYPQC | |||||||||||||||||||
1 | 5yfpB | 0.06 | 0.06 | 2.70 | 1.22 | SPARKS-K | NTTSSSNENPMNGFQNELNELSGHMISKIIHSQRLILQNNTNQDKSQGCVELSYYLKINQLFDTGKDSEGLKSTVEPNKVNTISGTSYLNLNCQPSSQGLTDSPTIIEMWLLILKYINDLWKICDQFIEFWEHIEKFLDGTYQNSIINEKRKENILIGDSNIIESYQKSLI-LKEEQINEVRLKGEEFITSVSQNLISFFTS--SQSSLPSSLKDSTGDITRSNKD-SGSPLDYGFIPPNCNGLSCLRYLPK | |||||||||||||
2 | 2tmaA | 0.08 | 0.08 | 3.02 | 1.69 | Neff-PPAS | ---KLDKENALDRAEQAEADKKAAEDRSKQLEDELVSQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQ | |||||||||||||
3 | 2nbiA1 | 0.10 | 0.10 | 3.79 | 1.24 | PROSPECTOR2 | QPSDLNPSSQPSEIDECFLPYSDLSFGRPDCDVLPTPQNINCPRCCATECRPDNPMFTPSPDGSPPICSPTMLPTNQPTPPEPSSAPSDCGEVIEECPLDTCFLPTSDPARPPDCTAVGRPDCDVLPFPNNLGCPACCPFENPMFTPSPDGSPPNCSPTMLPTPQPSTPTVITSPAPSSQPSQCAEVIEQCPIDECFLPYGDSSRPLSPEPSSQPSDCGEVIEECPIDACFSPSPSAVTVPLTPAPSSAPTR | |||||||||||||
4 | 4btgA | 0.11 | 0.11 | 3.99 | 1.19 | SPARKS-K | IKADAVGKVPPTAILEQLRTLAPSEHELFHHITTDFVCHVLSPLGFILPDAAYVYRVGRTATYPNSSVDSKMLQATFKAKGALAPAISQHLANAATTAFERSRGNFDANAVVSSVLTILGRLWSSTPKELDP-SARLRNTNGID-QLRSNLALFIAYQDMVKQRGRAEVVSPLRPINETTSYIQTSAIDHMGQPSHWQFATAFTPVKLANNSNQRFLDVEPGISDRMSATLAPNTFAVSAFVKNRTAVYEAV | |||||||||||||
5 | 6g18y | 0.13 | 0.12 | 4.28 | 0.62 | FFAS-3D | LPYELRFKEPLPEYVRLVTEFSKKTGDYPSLDIQVLALTYQLEEFVGVSHLKQEPQKVKVSSSIQHPETPLHISGFHLPGGWITPSNIKQIQQELEVRVGCLTTDFAMQNVLLQMGLHVLARCHGCFKTTSDMSRVFCSHCGNKVTVSDDGTLHMHFSRNNPRGLRYSLPTPKGGKYAINPHLTE-------DQRFPQLRLSQKARQKTNVFAPDYSPFVENDISSRSATLRRRLNPNASRKKFVKKR---- | |||||||||||||
6 | 3f1sA2 | 0.13 | 0.08 | 2.60 | 0.33 | HHpred | ---------------------WLTPFDPVTEVDTFHYKTIKVPMMYGAGKFASTFDK-NFRCHVL----------------KLPYQGNA---TML--VVLMEKMGDHLEDYLTTDLVETWL------RNMKTRNMEVFFKFKLVIEVDERGTEAVAGILS--------EIT---AYSMPPVIKVDRPFHFMIYEETSGMLL--------------------------------------------------- | |||||||||||||
7 | 1kanA | 0.12 | 0.11 | 3.79 | 0.87 | MUSTER | NGPIIMTREERMKIVHEIERILDKYGD--DVKA-VYGSLGRQTDGPYS-MSTEEAEFSHEWTTGEWSEEILLDYASQVESDWPLTHGQFFSIGGYLEKVYQTAKSVEAQKFHDAICALIVEELFEYAGKWRNIRVQGPTTFLPSLTVQ-MAGAMLIGLHHR-------ICYTTSASVLTEAVKQSDLP------SGYDH--LCQFVMSGQLSDSEKLLESLENFNGIQEWTERHGYIVDVSKRIP---F--- | |||||||||||||
8 | 4qwvA | 0.16 | 0.03 | 1.06 | 0.33 | CNFpred | --------------------------------------------------------------------------------------------------------YVWITYAAVQSLATALERTGSEPLALVKDLKANGANTIGPLNWDEKGDLKG------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 2pffB | 0.19 | 0.17 | 5.52 | 0.96 | HHsearch-2 | EQFNKILPEPTETTPAELVG---KFLGYVSFDQVCFEIHALAAKLLQNDTTLV-KTEIKNYITARI----MAKRPFDKKSNSALFRAVGNAQLFGQGNTDDYFLDAESIPISCPLIGVIQLAHYVVTAKLLGHSQGLVTA-VAIAETDSWESFFVSVRKAITVYEAYPNTSLPSPMLSIEQDYVTNSHLPAGKQVEISLNLTLRKAKA------------PSGLDQSRIPFSERKLKFPVASPFHSHLLVPA | |||||||||||||
10 | 1pdiR | 0.08 | 0.08 | 3.24 | 1.59 | Neff-PPAS | --NGRGSTTSMRGVVKLTTTAGSQSGGDASSALAWNADVIHQRGGQTINGTLRINNTLTIASGGANITGTVNMTGGYIQGKRVVTQNEIDRTIPVAIMMWAADSLPSDAWRFCHGGTVSASDCPLYASRIGTRYGGSSSNRGSHLTNPNVNGNDQFGKPRLGVGCTGGYVGEVQIQQMSYHKHAGGFGEHDDLGAFGNTRRSNFVGTRKGLDWDNRSYFTNDGYEIDPESQRNSKYTLNRPELIGNPWNISL | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |