>PF08434 (265 residues) VQLNNNGYEGIIFAIDPRVPEDGKIIEQIKDMVTTASTYLFEATEKSFFFKNVLILIPNN WKENSQYKRPKHGSYKHADVLIAPPTLPGRDEPYTRQFIVCEEKGEYIHFTPDFVLGKKQ KEYGPSDRLFVHEWAHLHWGVFDEYNEDEPFYSAKSKRVEATRCSTGITGINRVYKCQGN SCIIRGCRIDSQTKLYEKDRQFFPDKDQTGKASIMFMQGINSVVEFCNKENHNREAPSLQ NKMCNSRSTWEVISNSEDFKNTTSL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | VQLNNNGYEGIIFAIDPRVPEDGKIIEQIKDMVTTASTYLFEATEKSFFFKNVLILIPNNWKENSQYKRPKHGSYKHADVLIAPPTLPGRDEPYTRQFIVCEEKGEYIHFTPDFVLGKKQKEYGPSDRLFVHEWAHLHWGVFDEYNEDEPFYSAKSKRVEATRCSTGITGINRVYKCQGNSCIIRGCRIDSQTKLYEKDRQFFPDKDQTGKASIMFMQGINSVVEFCNKENHNREAPSLQNKMCNSRSTWEVISNSEDFKNTTSL | |||||||||||||||||||
1 | 1buvM | 0.12 | 0.08 | 2.66 | 0.71 | SPARKS-K | IQGLKWQHNEITFCIQNYTPKVGE--YATYEAIRKAFRVWESATP-------------LRFREVPYAYIREGHEKQDIMIFFAEGFHGDSTPFFLAHAYFPGPIGGDTHFDSAWTVRNEDLNGNDIFLVAVHELGHA-LGLEHSSDPSAIMAPYQWMDTENFVLPDDDRRGIQQLYGGES------------------------------------------------------------------------------------- | |||||||||||||
2 | 4dd8A | 0.13 | 0.09 | 3.03 | 0.64 | FFAS-3D | ---RETRYVELYVVVDNAEGSEAAVRHRVLEVVNHVDK-LYQKLNFRVVLVGLEI-----WNSQDRFHVSPDARRHLHDNVITGVDFTGTTVGFARVSAMCSHSSGAVNQ-------DHSKNPVGVACTMAHEMGH-NLGMDHDENVQG-----------------------------------------CRCQERFEAGRCIMAGSIGSSFPRMFSDSQAYLESFLER----------PQSVC--------LANAPD------- | |||||||||||||
3 | 3p1vA | 0.17 | 0.13 | 4.37 | 0.45 | HHpred | -RYLQDCIDVAILAEGYTEKE-DVF----YQDAQRTCESLFSYERSKSKFNIVAVASPSTWKQTAVFDTFYSDRYLTSRVKVH---NALAGIPYTDVYGGGGIYNSYTLTTA----HH------PFKPVVVHEFGHSFGGLADEYFYDNDTYPLDVEPWEQNISTRVFASKWK------------D--LPSGAPIPTPIAEKKKYPVEGYSAKGIYRPAYDCR-K----TNE---Y-PEFCPVCQ-----RAIRR-IEFY----- | |||||||||||||
4 | 1xfuA1 | 0.12 | 0.10 | 3.45 | 0.69 | MUSTER | --------NNL-VKTEFT-NETLDKIQQTQDLLKKIPKDVLEIYSEL----GGEIYFTDIDVEHKELQDLSEEEKNSMN---SRGEKVPFASRFVFEKKR-ETPKLIINI-------KDYAINSEQSKEVYYEIGKGILDIISKDKSLDPEFLNLIKSLS----DDSDSSDLLFSQKFKEKLELNNKSIDIN--FIKENLTEFQH----SLASYYFAPDHRTVLE--------LYAP-----------MFEYMNKLEKFEKISES | |||||||||||||
5 | 4q1lA | 0.11 | 0.05 | 1.78 | 0.67 | CNFpred | ------RYIELVVVADHGMFNLNTIRKWVHEMLNTVNGFFRSM---NVDASLVNLEVWS-KKDLIKVEKDSSKTL-SHDHAQLLTVIVFDTIGIAYTAGMCDLSQSVAVVMDHS------KKNLRVAVTMAHELGHNLG------------------------------------------------------------------------------------------------------------------------------ | |||||||||||||
6 | 3e1dZ | 0.12 | 0.08 | 2.92 | 0.35 | HHsearch-2 | ------------------MLAD-------KESLIEALKLALSTNVKRNFTQSVEIILTFGID-K----KG-DLKL---REIVPLPKQPSKAKRVLVQLEYAKKASPKVVITREEL-----QKL-QGQKRPVKKLAQNEWFLINQE-SAGRLGPR--G-KFPTPLTADISEYI-----------------------------------NRFKRSVLVKTKDQPQVQVFI--GT-ED--KPEDLAENAIAVLNAIENKKTNLRGKAV | |||||||||||||
7 | 1xfuA1 | 0.10 | 0.09 | 3.19 | 0.93 | Neff-PPAS | -----------LVKTEFT-NETLDKIQQTQDLLKKIPKDVLEIYSEL---GGEIYFTDIDLVEHKELQDLSEEEKNSMN---SRGEKVPFASRFVFEKKR-ETPKLIINI-------KDYAINSEQSKEVYYEIGKGILDIISKDKSLDPEFLNLIKSLSDDSDSSD----------LLFSQKFKEKLELNNKSIDIN-----FIKENLTEFQHAFSLAFSYYFAPDHRTVLELYAPDMFEYMNKEKGGFEKISESLKKEGVEKD | |||||||||||||
8 | 1eb6A | 0.10 | 0.06 | 2.22 | 0.54 | HHsearch | -------------TEVTDCKGDSSLTSNAAKLANQAAEAAESGSKFEEYFKTTDQ---QTRTTVARLRAVAKGSTSGGSTTYHCNDPEPNVLAYTLPS------KNEIANCDIYYSEPPLAHAQDQATTTLHEFTHAPGGTED-LGYG-----Y-------DAATQ-LSAQDA---------------LN------------------NAD----------SYALYANA-------------------IEL---KC--------- | |||||||||||||
9 | 4dd8A | 0.12 | 0.08 | 2.69 | 0.71 | SP3 | ---RETRYVELYVVVDNAEGSEAAVRHRVLEVVNHVDKLYQKLN---FRVVLVGLEI---WNSQDRFHVSPDARRHLHDQLITGVDFTGTTVGFARVSAMCSHSSGAVNQ-------DHSKNPVGVACTMAHEMGHNLDHDENVQGCRCQERFEAGRCIM----AGSIGSSFPRMDCSQAERPQSVCLANAPD------------------------------------------------------------------------ | |||||||||||||
10 | 3txaA1 | 0.07 | 0.06 | 2.71 | 1.00 | PROSPECTOR2 | TTVELNQPLDVVVLLNNERANNSQRALKAGEAVEKLIDKITSNKDNRVALTEATVSKGVADQNGKALNDSVSWDYHKTTFTATTHNYSRIPKEAEHINGDRSSNARKKLITMSYAINFNPYISTSYQNQFNSFLN----KIPDRSGILQEDFIINGDDYQIVKGDGESFKLFSDRKVPVTGGTTQAAYRVPQNGYAINSGYIFDPKTKKVSATKQIKTHGEPTTLYFNGVNGDPGATPLEAEKFDTNKIYDELN--KYFKTVEEK | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |