>PF08392 (289 residues) LRRPRAVYLVDYACFRPNPSYRFSHANFLEHARLTPYIDDSSFRFLTRMISRSGLGDRTY APTCTHYLPPRTGLNEAREEAEEVVFACVADLLARTRVRPEEIDIVVTNCSAFNPSPSLA DTVVNRFGLRVDVRAVHVSGMGCSAGVIAVDVARGLLQSAPPGARALVVSTETTSSFHYV GTSRAMLLPSVLFRMGGGAALLSTSRSSSVSARFRLSHLVRTITAAEDKAYRCAVHEEDE EGNIGVNLSKDLVAVAGNTLKENIATIGARVLPASEKLIFALSFVARKV |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | LRRPRAVYLVDYACFRPNPSYRFSHANFLEHARLTPYIDDSSFRFLTRMISRSGLGDRTYAPTCTHYLPPRTGLNEAREEAEEVVFACVADLLARTRVRPEEIDIVVTNCSAFNPSPSLADTVVNRFGLRVDVRAVHVSGMGCSAGVIAVDVARGLLQSAPPGARALVVSTETTSSFHYVGTSRAMLLPSVLFRMGGGAALLSTSRSSSVSARFRLSHLVRTITAAEDKAYRCAVHEEDEEGNIGVNLSKDLVAVAGNTLKENIATIGARVLPASEKLIFALSFVARKV | |||||||||||||||||||
1 | 2d51A | 0.15 | 0.15 | 4.98 | 1.57 | SPARKS-K | QKADGTATVMAIGTAHPP--HIFPQDTYADVYFRATNSEVELKKKFDHICKKTMIGKRYFNYDEPNITSYDERQDICVPGVPALGTEAAVKAIEEWGRPKSEITHLVFCTSCGVDMPSADFQCAKLLGLHANVNKYCIYMQ-GYAGGTVMRYAKDLAENN-RGARVLVVCAELTIMGLPNETHLDNAIGISLFGDGAAALIIGSDPIIGVKPMFEIVCTKQTVI----PNTEDVIHLHLRETGMMFYLSKGSPMTISNNVEACLIDVFKSPHPGG---RAILDQVEAKL | |||||||||||||
2 | 2h84A | 0.16 | 0.15 | 5.07 | 2.92 | FFAS-3D | ----NNSFVLGIGISVP--GEPISQQSLKDSISNDFSDKAETNEKVKRIFEQSQIKTRHLVRDYTKPETITDVNNQFKKVVPDLAQQACLRALKDWGGDKGDITHIVSVTSTGIIIPDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASPR-NRILVVCTEVCSLHFSNTDGGDQMVASSIFADGSAAYIIGCNPRIEETPLYEVMCSINRSFPNTENAM----VWDLEKEGWNLGLDASIPIVIGSGIEAFVDTLGKSILMNPKQTKNTWDVYHA-- | |||||||||||||
3 | 3tsyA2 | 0.16 | 0.15 | 4.96 | 5.13 | HHpred | QRAKGPATILAIGTATPDH--CVYQSDYADYYFKVTKSMTALKKKFNRICDKSMIKKRYHLTEEMLEMAPNIRQEIITAEVPKLGKEAALKALKEWGQPKSKITHLVCTTSGV-EMPGADYKLANLLGLEPSVRRVMLYHQGCYAGGTVLRTAKDLAENNAG-ARVLVVCSEITVVTFRGPDALDSLVGQALFGDGSAAVIVGSDPDIIERPLFQLVSAAQTFIPN----SAGAIAGNLREVGLTFHLWPNVPTLISENVEKCLTQFDPLGISDWNSLFWI-------- | |||||||||||||
4 | 2h84A | 0.15 | 0.15 | 4.98 | 1.52 | MUSTER | ----NNSFVLGIGISVP--GEPISQQSLKDSISNDFSDKAETNEKVKRIFEQSQIKTRHLVRDYTKLETITDVNNQFKKVVPDLAQQACLRALKDWGGDKGDITHIVSVTSTGIIIPDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASPR-NRILVVCTEVCSLHFSNTDGGDQMVASSIFADGSAAYIIGCNPRIEETPLYEVMCSINRSFPNTENAM----VWDLEKEGWNLGLDASIPIVIGSGIEAFVDTLLDKTAISAKDCEFLIHTGGKSI | |||||||||||||
5 | 2d3mA | 0.14 | 0.14 | 4.71 | 2.04 | CNFpred | QKADGTATVMAIGTAHPP--HIFPQDTYADVYFRATNSKVELKKKFDHICKKTMIGKRYFNYDEEFL-SLNDRQDICVPGVPALGTEAAVKAIEEWGRPKSEITHLVFCTSCGVDMPSADFQCAKLLGLHANVNKYCIYMQGMYAGGTVMRYAKDLAENN-RGARVLVVCAELTIMMLRAPNHLDNAIGISLFGDGAAALIIGSDPIIVEKPMFEIVCTKQTVIPNTEDVIHLHLRE----TGMMFYLSKGSPMTISNNVEACLIDVF-LFWIPHPGGRAILDQVEAKL | |||||||||||||
6 | 3vs8A | 0.14 | 0.13 | 4.61 | 0.89 | HHsearch-2 | --HPNSAVLADFIPVQLAK--PVPQRITLELTAYGFARAVQVYKTVKEKFDKAQIKQRQLVLTDIRQAHLKDPRGADLKTRHESYAKVVGKGLEQMFETLEAPDDLIHVTCSGYLAPSPAERMVADRGWFETTVTHSYN-MGCYGAFPAIKMAHGMLASPPK-TRVDIAHTELMSAHNNIASRVDNIISATLFSDGLIKYSVYPEDELQGLRGLRILAMSEHLLPD----SADTMTGVPGSHQFVMTLSPLVPAIIKRHVRAFAVDLLRRGMDFERDGPKIVDHVQEEL | |||||||||||||
7 | 2p0uA | 0.15 | 0.14 | 4.81 | 1.92 | Neff-PPAS | AQAVGPATVLAMGKAVPA--NVFEQATYPDFFFNITNSNPALKAKFQRICDKSGIKKRHFYLCTYMETSLNCRQEIAVAQVPKLAKEASMNAIKEWGRPKSEITHIVMATTSGVNMPGAELATAKLLGLRPNVRRVMMYQQ-GFAGATVLRVAKDLAENNAGARVLAICSEVTAVTFRAPSEHIDGLVGSALFGDGAAAVIVGSDPRGIERPIYEMHWAGEMVLPESDGAIDGHLTE----AGLVFHLLKDVPGLITKNIGGFLKDTKNLVASSWNELFWAVHPGGPAI | |||||||||||||
8 | 3vs8A | 0.14 | 0.13 | 4.60 | 1.37 | HHsearch | --HPNSAVLADFIPVQLAK--PVPQRITLELTAYG--FARQVYKTVKEKFDKAQIKQRQLVLTDIRQAHLKDPRGADLKTRHESYAKVVGKGLEQMFETLEAPDDLIHVTCSGYLAPSPAERMVADRGWFETTVTHSYN-MGCYGAFPAIKMAHGMLASPPK-TRVDIAHTELMSAHNNIASRVDNIISATLFSDGLIKYSVYPEDELQGLRGLRILAMSEHLLPD----SADTMTGVPGSHQFVMTLSPLVPAIIKRHVRAFAVDLLRRGMDFERDKLSIVDHVQEE- | |||||||||||||
9 | 2p0uA | 0.15 | 0.14 | 4.80 | 2.27 | PROSPECTOR2 | AQAVGPATVLAMGKAVPA--NVFEQATYPDFFITNSNDKPALKAKFQRICDKSGIKKRHFYLDTYMETSLNCRQEIAVAQVPKLAKEASMNAIKEWGRPKSEITHIVMATTSGVNMPGAELATAKLLGLRPNVRRVMMYQQ-GFAGATVLRVAKDLAENNAG-ARVLAICSEVTAVTFRAPSEIDGLVGSALFGDGAAAVIVGSDPRPIERPIYEMHWAGEMVLPESDGAIDGHLT----EAGLVFHLLKDVPGLITKNIGGFLKDKNLVGASSKGKFQASRDILSDQA | |||||||||||||
10 | 2p0uA | 0.16 | 0.14 | 4.72 | 2.44 | SAM | -QAVGPATVLAMGKAVPAN--VFEQATYPDFFFNISNDKPALKAKFQRICDKSGIKKRHFYLDQKIETSLNCRQEIAVAQVPKLAKEASMNAIKEWGRPKSEITHIVMATTSGVNMPGAELATAKLLGLRPNVRRVMMYQQG-FAGATVLRVAKDLAENNAG-ARVLAICSEVTAVTFRAPS-EDGLVGSALFGDGAAAVIVGSDPRPIERPIYEMHWAGEMVLPESDGAI----DGHLTEAGLVFHLLKDVPGLITKNIGGFLKDT---------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |