>PF08045 (291 residues) MEALLSLSFDNLSSYDQAKIRKGLRQVEGLLAQICLSSSSSPKTAAEKRRSVIDPGKEPP PRKALNELGGDPAFREFFKLQDGFEWNVAMRLVNCLDRLLGKTNDGQNDLLIIQTLDLIQ GILLLHPPSRSLFSRELYMNHLLDLLEPINCPAIQSSTIITLVCALIENPQNTRTFENLD GLLTITSLFKSRETSREVKLKLVEFLYFYLMPETPSIPSAVATASVPAMLQRSPSKLAGA FNNRTDHGAGRKRADSESDTTKTTEEKQNLLARYLNNVNDLVEDLKESTPF |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | MEALLSLSFDNLSSYDQAKIRKGLRQVEGLLAQICLSSSSSPKTAAEKRRSVIDPGKEPPPRKALNELGGDPAFREFFKLQDGFEWNVAMRLVNCLDRLLGKTNDGQNDLLIIQTLDLIQGILLLHPPSRSLFSRELYMNHLLDLLEPINCPAIQSSTIITLVCALIENPQNTRTFENLDGLLTITSLFKSRETSREVKLKLVEFLYFYLMPETPSIPSAVATASVPAMLQRSPSKLAGAFNNRTDHGAGRKRADSESDTTKTTEEKQNLLARYLNNVNDLVEDLKESTPF | |||||||||||||||||||
1 | 4db6A | 0.13 | 0.08 | 2.73 | 1.10 | FFAS-3D | ----LPQMVQQLNSPDQQELQSALRKLSQIA---------------------------SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN--EKIQKEAQEAL------------------------------------------------------------------------------------- | |||||||||||||
2 | 4plqA | 0.14 | 0.12 | 3.97 | 1.11 | Neff-PPAS | PGSELPQMVQQLNSPDQQELQSALRKLSQIAS---------------------------GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWTLGNIASGGNSSPNEQILQEALWTLGNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWTLGNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWTLGNIASGGNEQIQAVIDAGALPALVQLLS-----------------------SPNEQILQEALWTLGNIASGGNEQKQAVKEAGAE | |||||||||||||
3 | 4rv1A | 0.14 | 0.13 | 4.45 | 1.04 | SP3 | M-NDVEKLVKLLTSTDSETQKEAARDLAEIASG------PASAIKAIVDAGGVEVTSTDSEVRALANIASGPDEAIKAIVDAG--------GVEVLVKLLTSTD----SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD--SEVQKEAARALANIASGPTSAIKAIVDAGGVEVLVKTSTDSEVASGPDEAIKAIVDAGGTSTDSEVQGPDEAIKAIVDA-GGVEVLVKLLTSTDSE | |||||||||||||
4 | 4plqA | 0.13 | 0.11 | 3.79 | 1.00 | PROSPECTOR2 | PGSELPQMVQQLNSPDQQELQSALRKLSQIA---------------------------SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWTLGNIASGGNEQIQAVILQEALWTLGNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWTLGNIASGGNEQIQAVIDAGALPALVQLLS--SPNEQILQEALWTLGNIASGGNEQIQAVIDAGALPALVQLL-----------------------SSPNEQILQEALWTLGNIASGGNEQKQAVKEAGAE | |||||||||||||
5 | 3nowA | 0.10 | 0.09 | 3.40 | 0.94 | SPARKS-K | DKASIHALMDLARGGNQ----SCLYGVVTTFVNLCNAYEKQEMLPIELAKFAKQHIPEEHELDDVDFINNEGITTALCALAKTESHNSQELIARVLNAVCGLKEQEGGVKALLRMALATQALARIGITPEVSFRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED--HLYLTRAAAQCLCNLV--------------MSEDVIKMFEGDRVKFLALLCED-----------EDEETATACAGALAIITSVSVKCCEKILAIASW | |||||||||||||
6 | 5a7dL | 0.12 | 0.08 | 2.94 | 1.08 | FFAS-3D | --ERSERVLSGLQASSLPEALAGATQLLSHLDDFTRGVFFNDAKIERRR-----------YEQHLEQINLESLLDDVQLLKRHTLITLRLIFERLVRVLVISIEQSQCDLLLRANINMVATLMNIDRSLSDAFVQNEAVRTLLVVVLDHKQSSVRALALRAL-ATLCCAPQAINQLGSCGGIEIVRDILQSAGERGAIRREAVSLLAQITAAWHGSEHRVPG--------------------------------------------------------------------- | |||||||||||||
7 | 4r0zA | 0.13 | 0.12 | 4.04 | 0.57 | HHpred | -GLSLPDLVKLMCDHDESVVARAVHRAYML----SREDPNFF------------------------NAPGFSFVEALMAASKSSNVNVRRNAIGALSHMSEQRGGDSLESVVHYAVTTLRNLLMHVSDSRAQARALNAVEALTPHLHK-TNPKLLAQVADGLYFLLIDDAPSKITFLSLLGPQILVSILREYSDHRKLIYTVVRCIRSLSVC-PSNKPALISLGCLPAELCTAKDERAILVSDSATNEENLTIRVANDLTCNNTRNKQTVCS--HGGIDALVTAIRRLPE- | |||||||||||||
8 | 4plqA | 0.16 | 0.14 | 4.71 | 0.97 | MUSTER | PGSELPQMVQQLNSPDQQELQSALRKLSQIAS-----------GGNEQIQAVIDAGALPALVQLLSSPNEQEALWTLGNIASGGNEQIQAVIDAALPALVQLLSS-PNEQILQEALWTLGNIASGGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWTLGNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWTLGNIASGGNEQIQAVIDAGALPALVQSSPNEQILQEALWT------------GNIASGGNEQKQAVKEA-GAEPALEQLQSSPNEK | |||||||||||||
9 | 3nmzA | 0.14 | 0.11 | 3.78 | 1.00 | CNFpred | ARARASAALHNIIGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPAPVEHQICPAVCVLMKLSFDEEHRHAMNEL--GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDANKATLCSMKGCMRALVAQLKSE-SEDLQQVIASVLRNLSWRADNSKKTLREVGSVKALMECALEV-KKESTLKSVLSALWNLSAH--------------------------------------------------CTENKADICAV--GALAFLVGTLTYRSQT | |||||||||||||
10 | 4db6A | 0.15 | 0.10 | 3.46 | 0.53 | HHsearch-2 | ---ELPQMVQQLNSPDQQELQSALRKLSQ----IASGGNEQI--------------------------------QAVI------DAGALPALV----QLLSSP----NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQKQAVKEAGALE--------KLEQLQ---------------SHENEKIQKEAQEALEKLQS--------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |