>PF07887 (276 residues) LRLIFSKNLSLPIFTGSKIVDIENNPLQVLLVDTSVAGTDRMSLVSFAHPIKIEIVVLDG DFPLGDCDAWTAEEYDSKIVKERTGKRPLLAGEVTITMREGVATIAGDIEFTDNSSWIRS RKFRIGAKVSPGSNHQGARIYEAMTEAFVVKDHRGELYKKHHPPMLNDEVWRLQKIGKEG AFHKKLQSEGINSVQDFLKLSVVDPQKLRTILGAGMSDKMWDATIKHARTCVLGNKLYLL KGNNLAIFLNPVCQLVKAEIDGHLYHTRDLNNLNRV |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | LRLIFSKNLSLPIFTGSKIVDIENNPLQVLLVDTSVAGTDRMSLVSFAHPIKIEIVVLDGDFPLGDCDAWTAEEYDSKIVKERTGKRPLLAGEVTITMREGVATIAGDIEFTDNSSWIRSRKFRIGAKVSPGSNHQGARIYEAMTEAFVVKDHRGELYKKHHPPMLNDEVWRLQKIGKEGAFHKKLQSEGINSVQDFLKLSVVDPQKLRTILGAGMSDKMWDATIKHARTCVLGNKLYLLKGNNLAIFLNPVCQLVKAEIDGHLYHTRDLNNLNRV | |||||||||||||||||||
1 | 2hz6A | 0.08 | 0.07 | 2.62 | 0.84 | SPARKS-K | --------------PETLLSTLDG---SLHAVSKRTGSIKWTLKEDPVLQVAFLPDPNDGSYTLEGLTKLIPELVQASPCRLYMGK-----KQDIWYVIDLLGRTEYTITMYDTKTRELRWNATYFDYAASLPDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLR-------KVMHINVAVETLRYLTFMSGEVGRITKWKYPFPKETEAKSKL--TPTLYVGKYSTSLYASP-------SMVHEGVAVVYWLLIGHHE | |||||||||||||
2 | 4n6rB | 0.12 | 0.07 | 2.42 | 0.62 | FFAS-3D | WSLQVVQQPIRARMCGFGDKDRRPITIRLIVKDAQTQKEVDINSLDS-SFYVVMADLWNADGTHEVN------------LVKHGMFTRNLIGCLSASAKIGVWFVLQDLSVR------TEGIFRLKFSFEVINKGTAPILASTFSEPFQVFSAK-------KFPGVIE----------STPLSKVFANQGIK------------------------------------------------------------------------------------ | |||||||||||||
3 | 4n6rB | 0.14 | 0.08 | 2.61 | 0.36 | HHpred | WSLQVVQQPIARMC-GFG--DKDRRCIRLIVKDAQTQK---EVDINDSSFYVVMADLWNADGTHE----V-------NLVKH-GMFTRNLIGCLSASLKIGVWFVLQDLSVRT------EGIFRLKFSFVNVGKSTAPILASTFSEPFQVFSAK------KFPG-----------VIESTPLSKVFANQGIKIP---------------------------------------------------------------------------------- | |||||||||||||
4 | 5xxzA | 0.11 | 0.11 | 3.91 | 0.66 | MUSTER | GLVTNQAQLAVVHRNQPQSQLTKNQDFFISPNEDGNKDFVAFKGLENNVYNDLTVNVYAKDDHQKQTPIWGASAIESTAWYGITARGSKVPGDYQYVVTHGYTISVNDDHFTPDKTKALGSSGIVREEVFYLAKKNGRKFDVTEGDGITVSDNKVYIISKRDGVTLSDYYYLVEDRAGNVSFATLRDLKAVGKDKAVVNFGLDLPV------PEDKQIVNFTYLVRDADGKPIENLEYYNNSGNSLILPYGKYTVELLTYDTNAAKLESLSADNNF | |||||||||||||
5 | 2apoA | 0.11 | 0.08 | 2.86 | 0.63 | CNFpred | --------------------------TGVLPVALE--RATKTIPMWHIPPKEYVCLMHLHR-------DASEEDILRVFK--------EFTGRIYQR-RIRKIHELELLDKDG-------KDVLFRVKCQSGT-AHMQELRRTKSGCFEEKD-----------------AVYLQDLL---DAYVFWKEDDEEELRRVIKPMEYGLRHLKKVVV------KDSAVDAICHGADVYRGIAKLSK-ETVLVETLKGEAVAVGK--ALMNTKEILNADKG | |||||||||||||
6 | 1uusA3 | 0.16 | 0.07 | 2.17 | 0.70 | HHsearch-2 | VALVLKSQFPVVISKGKQLGE---NQLVVLVLTGARSN---FHIN---GPVKATMI---CDSHP--------------------NPTTPLEMDSQ-PIYTLTAH-F-PLKFLAGTRKCSNLKFGVNIRDLDN---VTTTVESDASNPFVVIT---------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 4wa0A | 0.10 | 0.10 | 3.61 | 0.74 | Neff-PPAS | -ALNTNKNLTVEVYSGGDLTIDGGAVFNIDNLISKGEV---INQDSDSRNIVVRNIIYVEKSLKANRISPRSTNIDAKTIYVGQE---QLYGAGSYKFVQTLASIRGTLEVIDGATVTLKSNSAVYCNSLVVRN--GSRLILENGAKLYLATTPDASTIISSYPSPPAEIDEIRNRDYTSGLLTTPLPADSVGSNQLGSTADTSQTPPQIVIYGESYINDNEARIEISARLGSTLQLHLISRGNITFVGGNPYAGLTLKYQPSPPIQQDIESNTGI | |||||||||||||
8 | 2kz3A | 0.23 | 0.07 | 2.04 | 0.81 | HHsearch | ----------------------------------------------------------------------------------------------------------------------------------------------------------MGVLRVGLCPGLTEEM------------IQLLRSHRIKTVVDLV---SADLEEVAQKCG--LSYKALVALRRVLLAAFPVNDLYEELKTSTAILS--------------------------- | |||||||||||||
9 | 4hdjA | 0.11 | 0.09 | 3.42 | 0.68 | SP3 | GDVLWKKDLERPGVGYGLVGTLRG---DVIALDEATGKKKWTKRVNSESAPATVVVVQTQDLDAASGDRWI---------YESTVPVLTLRGTGAPLIAGNAGLASGKVVAVD----VQRGLPIWEQRVAIPQGRSELDRVVDIDGGLLLSGDTV---------SYQGRAAALD--VNSGRLLWQREASSYVGVSGSVEGLDSRGASSLWNNDALARRQLSAPAV-------FSSNVVVGDLEGYVHLLSQVGRFVGRERVDSDGVRVRPLVVGSW | |||||||||||||
10 | 4dtdA | 0.11 | 0.11 | 3.91 | 0.98 | PROSPECTOR2 | TK---ATPDFPTHFPKSSIGAPANSAQKFGYVKSAQGDALFLTKDNQYQNWQTHTVELVSYPCEDDKALWLATHFTTHIDQSNHQPLAPIQSEIEITNAKHVIAAGNGISAESQGQTITTPSGQVGVAAKGFGTSATPELRLLESAPWYQKSLKSQFASLTSAENLDDKSEQITPNANGLTDPKVKNAWEITKPSKIVEILSKSDAKIKPQLQSRYSESLSKNVFQYFQDGGEVAG----HGINNATVGDKHSPELAILFEFRTVPNELQSYLPKT | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |