>PF07587 (260 residues) NRLGLAQWLVHPEHPLTARVTVNRMWQHHFGTGLVKTAEDFGVQGEYPSHPALLDWLAVD FIESGWDVKRLHKLLVMSATYQQSSRVDAAKLAADPENRLLSRGARFRLDAEVIRDQALA VSGLLVPEIGGKSVRPYQPPGLWKPVGFGGSNTSVFKQDTGDKLYRRSMYTFWKRTSPPP SMTAFDAPDRETCQVRRARTNTPLQALVLMNDVQFVEAARKFAECVVRQGGSSVEERVTF AYRSLLSRRPTASELASVTK |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | NRLGLAQWLVHPEHPLTARVTVNRMWQHHFGTGLVKTAEDFGVQGEYPSHPALLDWLAVDFIESGWDVKRLHKLLVMSATYQQSSRVDAAKLAADPENRLLSRGARFRLDAEVIRDQALAVSGLLVPEIGGKSVRPYQPPGLWKPVGFGGSNTSVFKQDTGDKLYRRSMYTFWKRTSPPPSMTAFDAPDRETCQVRRARTNTPLQALVLMNDVQFVEAARKFAECVVRQGGSSVEERVTFAYRSLLSRRPTASELASVTK | |||||||||||||||||||
1 | 5nd1B | 0.13 | 0.12 | 4.28 | 0.99 | SPARKS-K | AQEQTFRARVERDSGFALTTVVTTIVGWLMH---------VGDSAAKRSRDGWLDYSASAMETTTDRVRYAGRMVVHSTLRKQRSRGTGDTTETENSGRYLLALPKC--DAGVAAAALALTWGKPKLGGAGAGVGYITGVNGTRATPHADTVFGRHMADAQEQNVHGALMPKVSRPMNEPAFREVWNVANSSSDLQMIDGEHFLRQLAQQITVNCTGTAMAIYQAVLAGPDGDTTRLQKDLYHHLFQ-YATTVQVMQANT | |||||||||||||
2 | 4txyA2 | 0.09 | 0.06 | 2.37 | 0.68 | FFAS-3D | ----FHQYYTNRND--------GLMGKLVLGS---FQYDTLNRPFQPGQDPKVEDWFNDSCIRIGKHLRKVCRFMKAWRDAQWDVGGPSSISLMAATVNILDSVAHDASDLGETMKIIAK-----------------------------------------------------------HLPSEFARGVESPDSTDEKPLFPPSY-KHGPREMDIMSKLERLPEILSSAESADSKSEALKKINMAFGRVTNSELIVLAK- | |||||||||||||
3 | 5y6pa2 | 0.15 | 0.13 | 4.40 | 0.42 | HHpred | -----------KKNIVNLDQLKRAVYLRIFGRFLYS--------------EELVKKFEEQFCSGKCSVRDFVRSLAKSSVFRALYWQPLKAIEY-IHVRLLGRPTYGRQEIDTMIDRIIDSREYT--ETFGSSIVPYESNTLISR-KLGSNKDNRNLVSQGVT-SRRDIFEFCKKNQRAIYRQVFERDINTFTVGDE---FHNLEK-AFLLNEIVQEVIEYLGTKEFYQ-PYPNTKVIELGTKHFLGRAPSNAEIRYYNQ | |||||||||||||
4 | 5cwqA | 0.12 | 0.10 | 3.55 | 0.77 | MUSTER | RESEEAERRL-----QEARKRSEEARER----------DLKELAEALIEEARAVQELARVACERG-NSEEAERASEKAQRVLEEARKVSEEAREQGDDEVLALA------LIAIALAVLALA-EVACCRGNSEEAERASEKAQRVLEEARKVSEEAREQGDDEVLALALIAIAL--AVLALAEVA---------CCRGNKEEAERAYEDA--RRVEEEARKVKESAEEQGDSEVKRLAEEAEQLARE---ARRHVQECRG | |||||||||||||
5 | 4d4zA | 0.11 | 0.08 | 2.80 | 0.84 | CNFpred | AIAWISQAFDD-DSALLKHELAYCLGQMQ--------------------DARAIPMLVDVLQDT--RQEPMVRHEAGEALGAIGDPEVLEILKQYSSD---------VIEVAETCQLAVRRLEWLQQHGGEPAAGPY---------------------------LSVDPAPPAEERDVGRLREALLDESRPL--------FERYRAMFALRNAGGEEAALALAEGLHC-----GSALFRHEVGYVLGQLQHEAAVPQLAA | |||||||||||||
6 | 2pffB | 0.12 | 0.12 | 4.32 | 0.63 | HHsearch-2 | LQEQFNKILPADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVENYLEGNDIHALAAKLLQENDTTLVKLIKNYITKRPFDKKSNSALFVGEGNAQLVAIFVGDLIKFSAETLSELIRTTLDAEKVFTQGPSNTLSIPISCIGVIQFTPKETDSWESFYPNTSLPPSILLSISNLTVQDKTNSHLAGKQSLVNGANLVVSGPPQSLYGLNLTLRKAKAPSLINKLVKNNVSFLSGSISERIVDCIIRLPVKWETTTQFK | |||||||||||||
7 | 2qk1A | 0.07 | 0.06 | 2.50 | 0.69 | Neff-PPAS | ---DFQERITSSK-WKDRVEALEEFWDSVLSQT-------KKLKSTSQNYSNLLGIYGHIIQKDNIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRT---KEKKPSVIEAIRKALLTICKYYDPLASSGRNED--LKDILEHKHKTPQI------------------RECTQLFNASKEEKDGYSTLQRYLKDEVVPIVIQIVNDPAIRTIGFESFAILIKIFGNTFVKTLEHL---------DNLKRKKIEE | |||||||||||||
8 | 2l06A | 0.13 | 0.07 | 2.53 | 0.78 | HHsearch | NAAAKRQYMKPGLSALEKNAVIKAAYRQIFERDITK----A--------YSQSISYLESQVRNGDISMKEFVRRLAKSPLYRKQFFEPFINSRA--LELAFRHILGRGSSEEVQKYFSIVSSGGLPALVD----------ALVD---------------------------------SQEYADYFGEETV--P-YLRGLEHHHHHH------------------------------------------------------ | |||||||||||||
9 | 2r18A | 0.12 | 0.05 | 1.88 | 0.75 | SP3 | -------------------------------------------------------------------------------------TPEEAQREK----------------DTRISKKMETMGIYFATLNGHRGPSPGQLKYWQNTREIPDPNEDYLDYVHAEKS--------------------------------RLAS---------------EEQILRAATSIYGAPPQAFIDEVAKVYEINHGRGPNQEQMKDLLL | |||||||||||||
10 | 2yjnA | 0.11 | 0.11 | 3.98 | 0.78 | PROSPECTOR2 | SHVPLAWAFRTDVDLVDFMTHAGHDIIDYVRSLDFSETVLTPTFYALMSPDTLIEGMVSFCRKWRPDLPIAAAVTGPDITTRARQNFLGLLPDQPEEHR-------EDPLAEWLTWTLEKYGGPAFDEEVVVGQWRLDTGLKTVGMRYVDYNGPSVVPEWLHDEPERRRVCLTLQVSIEELLGAVDAQQLEGVANIPDVGFVPMHALLGVRAQRTQEFPDQLRESVKRVLDDPAHRAGAARMRDDMLAEPSPAEEELAAG | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |