>PF07418 (297 residues) MKVISLGLISSIIFTIVLAKNSPDSGSTTGCFGFGRKKPKKIHTTVVAEPVKAPEIVDFD PKLTNLNFIEEFEPITIEGCKSRLPELDEVFVSETDGMIIDKVTGFSRRENDSVLSGWYI RPYEEDYEDMIKVNFIPLREYYQRMENRPPKQYDGPPPVPDMPQISELPKKQEMLVKQTV STVQEEDAATLNRGEEFDVEIDPKVSSYLGDRENDGEGGETQGEVEENQGEYEENQDEYE ESQYEYEENQNKYEKIQNEYEETQGEYGETQGEVEENQNKYEENQDECEETQGEDGE |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | MKVISLGLISSIIFTIVLAKNSPDSGSTTGCFGFGRKKPKKIHTTVVAEPVKAPEIVDFDPKLTNLNFIEEFEPITIEGCKSRLPELDEVFVSETDGMIIDKVTGFSRRENDSVLSGWYIRPYEEDYEDMIKVNFIPLREYYQRMENRPPKQYDGPPPVPDMPQISELPKKQEMLVKQTVSTVQEEDAATLNRGEEFDVEIDPKVSSYLGDRENDGEGGETQGEVEENQGEYEENQDEYEESQYEYEENQNKYEKIQNEYEETQGEYGETQGEVEENQNKYEENQDECEETQGEDGE | |||||||||||||||||||
1 | 5h7iC | 0.12 | 0.11 | 3.92 | 1.22 | SPARKS-K | CSIYSLFKLGLFFAQLCVKSVVSSA-------ELQDCISTSHYAT---KLTRYFGVLTIFPCAKAIRYKPSTMAVSIDEPDCLLFHTGTLLARWSQGMHT---TSPLQIDPRANIVSLTIWPSILRLQDAMKFLFTVCETVLSLNALSRST--GVPPEL------HVLLPQISSMMKRKIV---QDDILKLLTSDAYVVELNSRGELTMNLPKRDNLTTLTNKSRTLAFVERAESWYQQVIRQKRYQQFLAMKMTQVFDILTRGQPYTETYDSLQDSTKEASEILAGLQGILPMDIS | |||||||||||||
2 | 2tmaA | 0.09 | 0.08 | 3.17 | 1.20 | MUSTER | MQML--------------ALDRAEQAEAD------KKAAEDRSKQLEDELVSLQKKKGTEDELDKYS-LKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQK--LEEAEKAADESERG----MKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEE---EIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTS | |||||||||||||
3 | 2tmaA | 0.09 | 0.08 | 3.09 | 2.26 | Neff-PPAS | -----------------LKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKKGTEDELDKYSELKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQK--LEEAEKAADESERGM----KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEI---KTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTS | |||||||||||||
4 | 3snhA1 | 0.11 | 0.10 | 3.68 | 1.16 | PROSPECTOR2 | MEDL-IPLVNRLQDAFSAIGQNADLDLGQSARDFLPRGSGTRRPLVNATTEYAEFLHCKGKKFTDFEEVRL--------------EIEAETDRVTKGISPVPINLRVYSPHVLNLTGMTKPDIEFQIRDMLNSDLANSDALKVAKEVDPQGQRTILDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVEEYKNFREESAEQAQRRDEMLRMYHALKEASIIGDIN | |||||||||||||
5 | 5dfzA | 0.05 | 0.03 | 1.64 | 1.00 | SPARKS-K | ----------------------------------------------------------------NISLF--RANGDSKLIKEYGDGFIPCFFILESIRVSEVQSGSLRKLLTGASTMIVLKLVGLW-CVLCTYTI------------DLNKLQPINEDTVLITGTNAP--VLDLIDGSYTLLLKLNKLLEYSSQVHEEINEISSKIEDDFLSLKNQNHWYMRTVQKSIETLEKEVLQRKKSKKNIEMAQLESNDTINHSKTELSLMSQDESDDYGSIYSRFVQIKDRLDQLRFKKLY | |||||||||||||
6 | 2qihB | 0.10 | 0.04 | 1.37 | 0.80 | FFAS-3D | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AENKKDAQIAKAQANENKDGIAKNQADQLHDKKITNLGILHSMVARAVGNNTQGVATNKADIAKNQADIANNIKNIYELAQQQDQHSSDIKTLAKVSAANTDRIAKNKAE--- | |||||||||||||
7 | 5xjcA | 0.22 | 0.13 | 4.14 | 0.43 | HHpred | ----------------------------KIAFPYLYNNPHHVHLTWYHTPNVVFIK-TEDPDLPAFYFDPLINPISHRHSVKSLPEFVEPFLKDTDNTPFNLRSGRTRRALDPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNA--LKHR---P---PKAQKKRYLFRSAKFQVRQGLNLIHRKNLNYLHLDYNFNLEVLSHVQYRLGNVD------------------------------------------------------------------------------------ | |||||||||||||
8 | 6defA | 0.07 | 0.06 | 2.70 | 0.87 | MUSTER | IDLPQIVVKSSVLENIVRDFLPRGQGIVTRRPLVLQINRQSSDERLADSTDKAANLDEWGELHLPGQKFYDFNKIRDEINRETEAKVRNAGISPAPINLRIYSPHVLTRVPVGDQPRDIERQIRDMILKYIQLAVTAANVDLANSDREVDPEGQR--LMDEGTDVVDILAGRIIPLRLGYVPVVNRGQRDIDNKKPITAALEAEKAFFENHKAYRNKSAYCGPYLARKLNLMMHIKQTLPDIKQRISSSLQKYQQELEALGPESDYTVRRRKECQQMVESLQRAAEIVSQV------ | |||||||||||||
9 | 2tmaA | 0.08 | 0.03 | 1.18 | 0.56 | CNFpred | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ERAEERAELSEGKCAELEEEIKTVTNNKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI------ | |||||||||||||
10 | 2pffA1 | 0.15 | 0.13 | 4.30 | 0.37 | HHsearch-2 | ITGAGKGSIGAEVLQGVVVTTSRFSKQVTDYYQSIYAKAKGSTLIV--VPFN----QGSKQDVEAIEFIY-----------------DTEKNG-GLGWDLDAIIPFAAIPEQGIELEHIDSKS--EFAHRIMLTNILRMMGCVKKQ-KSARGIETRPALPMSPNHGT-FGGDGMYSESKLSTLF----NRWHSESWANQLVGTGLMSANNIAEKNLLGLLTPEVVELCQK----SPVMADLNG--GLQFVPELK------EFTAKLRKELVETSEVRKAVSIETALEHKVVNGN--- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |