>PF07246 (269 residues) IFTILNVLTRAMLVMSMYSLTTWDSSSRNDICFSNDSPLEGLVYYWETHSKKHDYKKQGS QKCRVGDSDKKMISNVTIISLISEIQKSISELSLSCGNNDNSTGQVLTFNGLEDTIRGDY IVDCVTGLYQSDIGVGVGLGRINHDHQQVKNKAVVIDEKEKMISLLETQQSENDIKTQVL MSEIEQLKNQLSKRRNERGQEKRDAEKLMSDLMARNSDLRNHNVILTDEISQIKNNITIH RNRNMMSTTVVPAILSVALLSSSVGPITA |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | IFTILNVLTRAMLVMSMYSLTTWDSSSRNDICFSNDSPLEGLVYYWETHSKKHDYKKQGSQKCRVGDSDKKMISNVTIISLISEIQKSISELSLSCGNNDNSTGQVLTFNGLEDTIRGDYIVDCVTGLYQSDIGVGVGLGRINHDHQQVKNKAVVIDEKEKMISLLETQQSENDIKTQVLMSEIEQLKNQLSKRRNERGQEKRDAEKLMSDLMARNSDLRNHNVILTDEISQIKNNITIHRNRNMMSTTVVPAILSVALLSSSVGPITA | |||||||||||||||||||
1 | 2tmaA1 | 0.11 | 0.05 | 1.86 | 1.01 | FFAS-3D | --------------------------------------------------------------------------------------------------------------------------------------------KMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIES------ | |||||||||||||
2 | 2tmaA | 0.07 | 0.06 | 2.64 | 1.17 | Neff-PPAS | -------------ALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLK----SLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAIS | |||||||||||||
3 | 3tnfB | 0.09 | 0.09 | 3.50 | 1.04 | PROSPECTOR2 | LDEYEQAIKRADLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMEAFSKDSEKLTQLMEKHKGDEKTVQSLQREHLANLQVLHDAHTGKKSYV---NEKGNPVSSLKDAHLAINKDQEVVEHEGQFYLLQKGQWDAIKNNPAALEKAQKDYSQSKHDLATIKMEALIHKLSLEMEKQLETINNLIMSTDPKENEEATKLLHKHNGLNLKLANLQDMLAESIKDSPEKQKKAEHDFHKLQYETPMTVKKLETKQQLEDNGKEKINISK | |||||||||||||
4 | 4btgA2 | 0.09 | 0.06 | 2.28 | 0.71 | SPARKS-K | ------------------------------------------------------------------------FAVSAFVKNRTAVASTEFAYEDAYSVTIRNKRYTAEVKEF----------ELGLGQRRE----RVRILKPTVAHAIIQMWYSWFVEDDRTLAAARRTSRDDLAIDGRRMQNAVTLLRKIEMIGTGASAVHLAQSRIVDQMAGRSSDLHVGINRHRIRIWAGLAVLQMMGLLSR---SEAEALTKVLGDSNALGMVVA | |||||||||||||
5 | 3dtpB2 | 0.13 | 0.05 | 1.81 | 0.96 | FFAS-3D | ----------------------------------------------------------------------------------------------------------------------------------------------AEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDQLIKNKIQLEAKVKEMNERLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELTL------------------ | |||||||||||||
6 | 6f1tX2 | 0.11 | 0.03 | 1.22 | 0.74 | HHpred | ------------------------------------------------------------------------------------------------------------------------------------------------QHIRLESLQAEIKMLSDRKRELEHRLSA-------TLEENDLLQGTVEELQDRVLILERQGHDK----DLQLHQSQLELQEVRLSYRQLQGGGGGG----------------------------- | |||||||||||||
7 | 6gy6A | 0.11 | 0.10 | 3.64 | 0.84 | MUSTER | VQQQSIDLENAGKQITLT--------GDEIISVIDQMP---IIERVKNKLGDLTDKQLAEITYTNDDKEIAVELGNILESMKKDIKRQQENTQ-KVKTAVSDFKLKLIGGELSDGTIAQGL--------QPQISSKKKLMDDNNLSTTIKDLQSKIDEKNKEIDQFQKDYNKYVGLAFSGIISWAITGGIFGDKAEKARKQKNKLIDEVKDLQSQVKDKSALQTSVQNLSLSFAGIHTSMVDAEEALNHLDFMWNTMLTQITTSRDKFD | |||||||||||||
8 | 2tmaA | 0.13 | 0.06 | 2.07 | 0.64 | CNFpred | -----------------------------------------------------------------------------------------------------------------------------------------------KDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETREFAERSVTKLEKSIDDLEDELYAQKL | |||||||||||||
9 | 6f1tX2 | 0.15 | 0.05 | 1.62 | 0.70 | HHsearch-2 | -------------------------------------------------------------------------------------------------------------------------------------------------------------QHIIRLESLQAEIKM-------LSDRKRELEHRLSATLEENDLLQGTVEEL----QDRVLILERQGHDKDLQLHQSQLE-----------------LQEVRLSYRQLQGGGG | |||||||||||||
10 | 4cgkA1 | 0.08 | 0.06 | 2.49 | 1.11 | Neff-PPAS | ----------------------------------LTAQQQEAQKQVDQIQEQVSAIQAEQSNLQ-AENDRLQAESKKLEGEITELSKNIVSRNQSLEKQARSAQTNGAVTSYINTIVNSK-----------------SITEAISRVAAMSEIVSANNKMLEQQKADKKAISEKQVANNDAINTVIANQQKLADDAQALTTKQAELKAAELSLAAEKATAEGEKASLLEQKAAAEAEARAAAVAEAAYKEKRASQQQSVLASANT----- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |