>PF07103 (248 residues) IYAGQVRHRRFQPKTHSFQYRLFMMLLDLAELDTVFKSRWLWSSRGFNLAWFRRKDHMGD PNKPLADEVRRLVREQTGRTPRGPIRLLTHLRYFGYCFNPVSFYYCYDASDTRVEAIVAE VNNTPWGEQHCYVLTESMNQGRDRHKRYTFDKDFHVSPFMQMAVHYDWRFSAPDKQLNVH MQNLKQGENQQQKVFDATLALSQQPVTGFNLAKVLIQYPFMTLKVTTGIYYQALKLWLKG VTFYEHPK |
![]() | |
|
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | IYAGQVRHRRFQPKTHSFQYRLFMMLLDLAELDTVFKSRWLWSSRGFNLAWFRRKDHMGDPNKPLADEVRRLVREQTGRTPRGPIRLLTHLRYFGYCFNPVSFYYCYDASDTRVEAIVAEVNNTPWGEQHCYVLTESMNQGRDRHKRYTFDKDFHVSPFMQMAVHYDWRFSAPDKQLNVHMQNLKQGENQQQKVFDATLALSQQPVTGFNLAKVLIQYPFMTLKVTTGIYYQALKLWLKGVTFYEHPK | |||||||||||||||||||
1 | 5jmdA3 | 0.09 | 0.08 | 2.94 | 0.70 | SPARKS-K | KSGFFVFRNSWGMD-------ATQMVVKAGPK---GFWHCQPD---NGTFEMWFNDSGAGEGEVQRNWHRQTSVNKNLETTESVQTLVTENPSYKNF--KHRRSVFFVD--NTYFVIVDEVSGSAKGSVNLHYQMPKGESREDMTFLTQ----------FEDGSNMKLQCFGPEGYKRMNVSFNVKKDNENAVRYITVIYPVKKSADAPKFDAKFKNKTFDENGLEIEVKVNGKKQSLKYKL------ | |||||||||||||
2 | 4akrB | 0.11 | 0.06 | 2.31 | 0.55 | FFAS-3D | ---------------------------------------------------------------QANEIFEIYLNL--------------------YFEGGVSSVYCWDLDDNFAAVVLMKKTQDPMRGDSIHVVEVKLGKKDKAVYKLTSTVMLSIETDNDNTGKVNLAGS-------------------LTRQDEKEYTFNEVDTHCVNIGKMVEDMESKLRQTLETIYFGKTKEVVNTLR------ | |||||||||||||
3 | 6eooA4 | 0.13 | 0.05 | 1.68 | 0.23 | HHpred | ---------------------------------------------------------------------------------------------------------QVDEVR-RLVYFEGT-KDS-PLEHHLYVVSYVNPG---EVTRLTDRGYSH-SCCISQHCDFISKYSNQKNPHCVLYKLSSPE--DDPTCKTKEFWATIDSAG----------------------------------------- | |||||||||||||
4 | 4rotA | 0.09 | 0.07 | 2.80 | 0.61 | MUSTER | SIAIEYHSVVLYPDQSE-DIPVLYLL-NENSWQKRTAIERLLRHTNLIVVMPSTDLGWYTDTAYLSQELPQVLAAFNMTQKREKTFVAGL---MG-----GAFKWALKS--NRFSYAASF----GA-----LDFSPETNLEGNLGELAYWQGV-----FGQFE---------DPDLDKHYLKNMVAESDGKTKFYAWCGYE---FLTNEKAIADFQAQGL-EWYYWNQQLEVLLEWLPINYQKEERLS | |||||||||||||
5 | 5awfA | 0.08 | 0.06 | 2.50 | 0.80 | CNFpred | QLHAAVVEVIIH-KNAEVKYSTVQNWFPGDNN-------------TGGILNFVTKRALCEG--------------------NSKMSWTQSETGSAITWKYPSCILRGD----NSIGEFYSVALTSGHQQADTGTKMIHI---KNTKSTIISKGISAG---HSQNSYRGLVKIM-ARNFTQCDSMLIG---ANCGAHTFPYVECR-ISEEDAISMIV-LPLEFAVEAQKLLAISLEHSVG--------- | |||||||||||||
6 | 2d5gB | 0.11 | 0.04 | 1.31 | 0.67 | HHsearch-2 | ------------------------------------------------------------------------------------------------------------PPC-DSIVVAYYFCG----EPIPYETLVRGRA-----VTLQFKELL------TKKGSYRYYFKKVSDEGVVFEEVREDEA--ILPVFEEKIIGKVEKVD----------------------------------------- | |||||||||||||
7 | 4dgkA2 | 0.10 | 0.08 | 3.02 | 0.64 | Neff-PPAS | --------YVYEDQGFTFDAGP-TVITDPSAIEELFALAGKQLKEYVELLPVTPFYRLCWESGALVQGMIKLFQDLGGETTGNKIEAVHLEDGRRFLTQ----AVASNADSNSLFVLYFGLNHHHDQLAHHTVCFGPRLA---------EDFSLYLHAPCVTDSSL-----APEGCGSYYVLAPVPHLGT-------------ANLDWTVEGPKLRDRIFAYLEQHYMPGLRSQLVTHRMFTPFDFRT | |||||||||||||
8 | 3vg8G | 0.16 | 0.06 | 2.01 | 0.54 | HHsearch | ---------------------------------------------------------------------------GALPPGLG--TLYVDPSTL-----PEGPFLAYDRAG-NLVKVVF-VPLKKLNESHKYVIGTKLRA-------LGITRIDHVNIPSGPPGHYHIELVLVSVDQERKV-------LEGE-------------------------------------------------------- | |||||||||||||
9 | 2it1A2 | 0.09 | 0.05 | 1.87 | 0.65 | SP3 | ------------------------------TPDEVYYKPKFLGNPPMNFVEAKVEDGKLVITEKSKLPIPKQYVEIVKETGITEVIIGFRPHD----------AEIVKGEGEGIVGEVYSFE--PLGREQIVTVSVNDS-----IVKVFAPEG------EHFSFGEKVTIKVKEELL-VLFDKKTEKALEFSKL------------------------------------------------------ | |||||||||||||
10 | 2lf2A | 0.12 | 0.08 | 2.73 | 0.78 | PROSPECTOR2 | MRTDLALDFSVNKENKTITIKREFAFTRAEILDQ-------WWAPKPWKAKTKSMDFKEGG----------------------------------------TWLYAMVGPNGEEHWSICEYAIIKPIERFTGKDGFTDASGK--------------LNTEMPRSNWDMRFIDKGEITEVQYHISYD--------------------DVAQLEATIQMG----FKEGITMAMENLDELLKKLEHHHHHH | |||||||||||||
|
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |