>PF07042 (282 residues) KKRTAGGELAEKVSEAKQTALLKHTKQQIKDMQLSLFDLAPWTGSHAALPNDFGRSAIFT VRNKKVPRPALQGQSIYHVNKDVEITYTGIELRADDDELVFAQVLEYANGTALGEPVSFT FYELCQDLDWSINGRYYTRAEECLTRLQASAMQFSSQRIGRLESVSLIRRFRVLDRGKRT SRCQVEIDAEIVVLFAGDHYTKFVWEKYRKLSPNRDGRMFDYFATHKEPYPLKLETFRLM CGSDSTRPKKWREQVGEACDELRENGLVESAWVNDDLVHCKR |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | KKRTAGGELAEKVSEAKQTALLKHTKQQIKDMQLSLFDLAPWTGSHAALPNDFGRSAIFTVRNKKVPRPALQGQSIYHVNKDVEITYTGIELRADDDELVFAQVLEYANGTALGEPVSFTFYELCQDLDWSINGRYYTRAEECLTRLQASAMQFSSQRIGRLESVSLIRRFRVLDRGKRTSRCQVEIDAEIVVLFAGDHYTKFVWEKYRKLSPNRDGRMFDYFATHKEPYPLKLETFRLMCGSDSTRPKKWREQVGEACDELRENGLVESAWVNDDLVHCKR | |||||||||||||||||||
1 | 2nraC | 0.12 | 0.08 | 2.90 | 1.38 | SPARKS-K | ------------------------------------------------------------------------------VNKKTKIRHRNEQLP-LPAKRVMYMALALIDPLERGRVFKIRAEDLAALAKITP-SLAYRQLKEGGKLLGASKISL---RGDDIIALNIIEWIAYSPDE---GYLSLKFTRTIEPYISKNKFTTQLLTASLRLSSQYSSSLYQLIRKHYSNFKISVDELKEELIAKYPDFPIFKRDLNKAIAEIKKKTEISFVGFTVSKLKFEF | |||||||||||||
2 | 2nraC | 0.12 | 0.08 | 2.91 | 1.56 | FFAS-3D | -------------------------------------------------------------------------------NKKTKIRHRNEQLPLPAKRVMYMALALIDEPLERGRVFKIRAEDLAALAKIT-PSLAYRQLKEGGKLLGASKISLRGDDIIALAKELNLNIIEWIAYSPDEGYLSLKFTRTIEPYISSNKFTTQLLTASLRLSSQYSSSLYQLIRKHYSNFKISVDELKEELIAKYPDFPIFKRDLNKAIAEIKKK---TEISFVGFTVHEKE | |||||||||||||
3 | 5ubfA | 0.09 | 0.07 | 2.67 | 1.14 | HHpred | --------------------------------------------------------QALAPPRTR--KSYQKS--V-SISGRAVIETRSKNITV-DDL-TLFALFTLTVQYHD-NKTPLYITDILSLRGKKDSGPARDSIRDSIDRIEFTDFQLHELTGGKSDRFRFLARTITASSDGKPNLYILVWEPSFFEELTRDYFFLFPPEI-LKQHTLV-FQLYSYFRSRSRRHTDVLSELNQKLAR-NIEWRRFS-DLIRELRRLSEWGYHLTVKSIEEQVDIKC | |||||||||||||
4 | 2z9oA | 0.10 | 0.07 | 2.60 | 1.07 | MUSTER | ---------------------------------------------------------------------------------SNDLTEAAYSLSR-DQKRMLYLFVDQIR----DGICEIHVAKYAEIFGLT-SAEASKDIRQALKSFAGKEVVFYRPEEDGYESFPWFIKRAHSPSRG---LYSVHINPYLIPFFIGNRFTQFRLSETKEITNPYAMRLYESLCQYRKIVSLKIDWIIERYQLPQRMPDFRRRFLQVCVNEINSRTPMRSYIEKKKVFSFRD | |||||||||||||
5 | 1repC | 0.10 | 0.06 | 2.34 | 1.32 | CNFpred | -----------------------------------------------------------------------------------------------DQKRMLYLFVDQIRKS--DGICEIHVAKYAEIFGLT-SAEASKDIRQALKSFAGKEVVFY-------ESFPWFIKPAHSPS---RGLYSVHINPYLIPFFIGNRFTQFRLSETKEITNPYAMRLYESLCQYRGIVSLKIDWIIERYQLPQQRMPDFRRFLQVCVNEINSR-TPMRLSYIEKTTHIVF | |||||||||||||
6 | 2nraC | 0.12 | 0.09 | 3.02 | 2.24 | HHsearch-2 | ---------------------------------------------------------------------VNKKTKIRHRNELNH---TLAQLPL-PAKRVMYMALALIDSKERGRVFKIRAEDLAALAKIT-PSLAYRQLKEGGKLLGASKISLRGDDINEELDLNIIEWIAYS---PDEGYLSLKFTRTIEPYISSNKFTTQLLTASLRLSQYS-SSLYQLIRKHYSYFIISVDELKEELIAKYPDFPIFKRDLNKAIAEIKKKTEISGFTVEKGKIEFVV | |||||||||||||
7 | 2z9oA | 0.10 | 0.06 | 2.35 | 1.24 | Neff-PPAS | ----------------------------------------------------------------------------------------------RDQKRMLYLFVDQIRDG----ICEIHVAKYAEIFGLT-SAEASKDIRQALKSFAGKEVVFYRPEEDGYESFPWFIKRAHSP---SRGLYSVHINPYLIPFFIGNRFTQFRLSETKEITNPYAMRLYESLCQYRKIVSLKIDWIIERYQLSYQRMPDFRRRLQVCVNEINSRT---PMRLSYIEKKKGR | |||||||||||||
8 | 2z9oA | 0.12 | 0.08 | 2.78 | 3.62 | HHsearch | -------------------------------------------------------------------------------SN--DLTEAAYSLSR-DQKRMLYLFVDQIR----DGICEIHVAKYAEIFGLT-SAEASKDIRQALKSFAGKEVVFYRPEEKGYESFPWFIKRAHS---PSRGLYSVHINPYLIPFFIGNRFTQFRLSETKEITPYA-MRLYESLCQYRKIVSLKIDWIIERYQLPQQRMPDFRRRLQVCVNEINSRTPMLSYIEKKRTTHIV- | |||||||||||||
9 | 1repc | 0.11 | 0.07 | 2.70 | 1.44 | PROSPECTOR2 | SPRI-------------------------------------------VQSNDLTEA--------------------------------AYSLSR-DQKRMLYLFVDQIRKSH-DGICEIHVAKYAEIFGLT-SAEASKDIRQALKSFAGKEVVFYE-------SFPWFIKPAHSPSRG---LYSVHINPYLIPFFIQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPVSLKIDWIIERYQLPYQRMPDFRRRLQVCVNEINSRTPMRSYIEKKKSFRDIT | |||||||||||||
10 | 2nraC | 0.11 | 0.07 | 2.66 | 1.78 | SAM | -----------------------------------------------------------------------------------ELNHTLAQLPL-PAKRVMYMALALIDSKERGRVFKIRAEDLAALAKIT-PSLAYRQLKEGGKLLGASKISLRGDDIIEELDLNIIEWIAY---SPDEGYLSLKFTRTIEPYISSNKFTTQLLTASLRLSQYS-SSLYQLIRKHYSYFIISVDELKEELIAKYPDFPIFKRDLNKAIAEIKKKTEISGFT---------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |