>PF06813 (247 residues) HWFMLFASLLIMAASGAGYMFGMYSNEIKTSLGYDQTTLNLLSFFKEVGATVGIISGLVN EITPPWVVLSIGIIMNFLGYFMIWLAVTARIAKPQVWQMCLYICIGSNSQTFSNTGALVT SVKNFPGSRGSLLGILKGYVGLSGAIIAQLYHAFYGDHNPQALILLIAWLPAAVSFLFLP TIRILNTVHQTNDNKVFYHLLYISLGLAGFLMVLIIVQNKLSFTRSEYIADGVVVFFFLL LPLVVVV |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | HWFMLFASLLIMAASGAGYMFGMYSNEIKTSLGYDQTTLNLLSFFKEVGATVGIISGLVNEITPPWVVLSIGIIMNFLGYFMIWLAVTARIAKPQVWQMCLYICIGSNSQTFSNTGALVTSVKNFPGSRGSLLGILKGYVGLSGAIIAQLYHAFYGDHNPQALILLIAWLPAAVSFLFLPTIRILNTVHQTNDNKVFYHLLYISLGLAGFLMVLIIVQNKLSFTRSEYIADGVVVFFFLLLPLVVVV | |||||||||||||||||||
1 | 4q65A1 | 0.10 | 0.10 | 3.57 | 1.97 | SPARKS-K | PRAIYYVVALQIWEYFSFYGMRALLILYLTNLKYNDTHAYELFSAYCSLVYVPILGGFLADKVGNRMAVMLGALLMAIGHVVL------GASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYS-WAMGFGLAAVGMIAGLVIFLCHFTHTRGVRATNFLLPNWGWLLVLLVATPALITILFWK----EWSVYALIVATIIGLGVLAKIY-- | |||||||||||||
2 | 6e9nA | 0.11 | 0.11 | 3.91 | 1.76 | FFAS-3D | RYLTLVMIFITVVICYVRANLAVASAHIQEEFGITKAEMGYVFSAFAWLYTLCIPGGWFLDRVGSRVTYFIAIFGWSVATLFQGFA-------TGLMSLIGLRAITGIFEAPAFPTNNRMVTSWFPHERASAVGFYTSGQFVGLAFLTPLLIWIQEMLSWHWVFIVTGGIGIIWSLIWFKVYQPPRLTKGISKAELVFHRKLIGVYLGQFAVASTLLTQEKGITALKAGFMTTVPFLAAFVGVLL-- | |||||||||||||
3 | 4zowA | 0.13 | 0.12 | 4.23 | 1.94 | HHpred | GRQALFPLLVLESTYIGNDMIQPGMLAVVEQYQAGIDWVPTSMTAYLAGGMFQWLLGPLSDRIGRRPVMLAGVVWFIVTCLAILLAQ-------NIEQFTLLRFLQGISLCFIGAVGYAAIRESFEEVCIKITALMANVALIAPLLGPLVGAAWIHVLP-WEGMFVLFAALAAIFFGLQRAMPETATRIGEKSNGRFVAGAALGFSLPLLIASPIIIITGEQLSSYEYGLLQVPIALIAGNLLL--- | |||||||||||||
4 | 4q65A1 | 0.11 | 0.11 | 3.91 | 1.64 | MUSTER | PRAIYYVVALQIWEYFSFYGMRALLILYLTNLKYNTHAYELFSAYCSLVYVTPILGGFLADKVGNRMAVMLGALLMAIGHVVLGAS------EIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVRATNFLLPNWGWLLVLLVATPALITILFWKEWSVYALIVATIIGLGVLAKIY---- | |||||||||||||
5 | 4zp0A | 0.14 | 0.13 | 4.57 | 1.56 | CNFpred | LLFPLCLVLYEFSTYIGNDMIQPGMLAVVEQYQAGIDWVPTSMTAYLAGGMFQWLLGPLSDRIGRRPVMLAGVVWFIVTCLAILLAQ-------NIEQFTLLRFLQGISLCFIGAVGYAAIRESFEEACIKITALMANVALIAPLLGPLVGAAWIHVLPWEGMFVLFAALAAISFFGLQRAMPETATRIGEK-VAGALALGFVSLPLLAWIAQSPIIIITEQLSSYEYGLLQVPIFGALIAGNLLLA | |||||||||||||
6 | 6gs1A | 0.11 | 0.11 | 3.80 | 0.97 | HHsearch-2 | QPKAFYLIFSIEWERFGYYLQGIMAVYLVKQLGMSEADSITLSSFSALVYGLVAIGGWLGDKLGTKRVIMLGAIVLAIGYALVAWSG-------HAGIVYMGMAAIAVGNGLFKANPSSLLSTCYENRLDGAFTMYYMSVNIGSFFSMIATPWLAAK-YGWSVAFALSVVGLLITIVNFAFCRWVKQYGSDFEPINYRNLLLTIIGVVALIAIATWLLHNQEVARM---ALGVVAFGIVVIFGKEAF | |||||||||||||
7 | 4q65A1 | 0.11 | 0.11 | 3.91 | 1.72 | Neff-PPAS | RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYNTHAYELFSAYCSLVYVTPILGGFLADKVGNRMAVMLGALLMAIGHVVLGAS------EIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVRATNFLLPNWGWLLVLLVATPALITILFWKEWSVYALIVATIIGLGVLAKIY---- | |||||||||||||
8 | 6e9nA1 | 0.10 | 0.08 | 3.01 | 1.42 | HHsearch | RYLTLVMIFITVICYVDRANLAVASAHIQEEFGITKAEMGYVFSAFAWLYTLQIPGGWFLDRVGSRVTYFIAIFGWSVATLFQGFAT-------GLMSLIGLRAITGIFEAPAFPTNNRMVTSWFPHERASAVGFYTSGQFVGLAFLTPLLIWIQEM-LSWHWVFIVTGGIGIIWSLIWFKVYQPPRLTKGISKAELDYIRD----------------GGGLVDGDA-------------------- | |||||||||||||
9 | 4q65A1 | 0.10 | 0.10 | 3.57 | 1.69 | PROSPECTOR2 | SRAIYYVVALQIWEYFSFYGMRALLILLTNQLKYNDTHAYELFSAYCSLVYVPILGGFLADKVGNRMAVMLGALLMAIGHVVL------GASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPRRDGGFSLMYAAGNVGSIIAPIACGYAQEE-YSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVRATNPNWGWLLVLLVATPALITILFW-----KEWSVYALIVATIIGLGVLAKI-Y | |||||||||||||
10 | 6gs1A | 0.09 | 0.09 | 3.23 | 1.82 | SAM | -KAFYLIFSIELERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGVAIGGWLGDKLGTKRVIMLGAIVLAIGYALVAWSG-------HAGIVYMGMAAIAVGNGLFKANPSSLLSTCYENRLDGAFTMYYMSVNIGSFFSMIATPWLAAK-YGWSVAFALGLLITIVNFAFCQRWVKQYGSKPDFEPINYRNLLLTIIGVVALIAIATWLLHNQEVARMALGVVAFGIVVIFG------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |