>PF06798 (250 residues) IKKMKLYDGESVEGFKQKDVAELQAEAEGEGMSGVDPRYVINRISSALITKDTKCINALD ILRALKEGLDQHPSITRDEREKLLNFIVLARKEYDEVAKKEVQRAFVYSYEESARTLFDN YLDNVEAYCNGVKVKDPISGEELDPDEKLMRSIEEQIGVTENAKKSFREEILIRLSSYAR KGKKFDYNSHERLREAIERKLFADLKDVVKITTSTKTPDPEQLKRINAVIDRLISNHGYC PICANELLKY |
![]() | |
|
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | IKKMKLYDGESVEGFKQKDVAELQAEAEGEGMSGVDPRYVINRISSALITKDTKCINALDILRALKEGLDQHPSITRDEREKLLNFIVLARKEYDEVAKKEVQRAFVYSYEESARTLFDNYLDNVEAYCNGVKVKDPISGEELDPDEKLMRSIEEQIGVTENAKKSFREEILIRLSSYARKGKKFDYNSHERLREAIERKLFADLKDVVKITTSTKTPDPEQLKRINAVIDRLISNHGYCPICANELLKY | |||||||||||||||||||
1 | 2oerB | 0.12 | 0.08 | 2.98 | 1.08 | FFAS-3D | ---------------SSELVASILEAAVQAGAQRFTTARVAERA----------GVSIGSLYQYFPNK---------------AAILFRLQSDEWRRTTRLLGEILERPPLERLRRLVLAFVRSECE------------------EAAIRVALSDAAPLYRDEAREVKAEGARVFQAFLREALP---EVAEAERSLAGDLLTTTLGAVGKQFSEQPRSEAEIERYAEALADLC----AYLAALG------ | |||||||||||||
2 | 1vt4I3 | 0.08 | 0.07 | 2.65 | 1.06 | HHsearch | YNIPKTFDSDLIPYLDQYHIHHLKNEHERMTLFRMVFLDFRFLEQKIRHDSTNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR---GGGGGGGGGGGGGGGG------------GGGGGGGGG----------GGGGGGGGGGGGGGGGGGGG---------------GGGGGGGGGGGGGGGGG-G---G-GGGGGGGGGGGGG- | |||||||||||||
3 | 5cwpA | 0.11 | 0.09 | 3.33 | 0.80 | SPARKS-K | ----------------------MSSDEEEARELIERAKEAAERAQEAAERTGDPRVELKRLAQEAAEEVKRDPS--SSDVNEALKLIVEAIEAAVRALEAAERTG-DPEVRELARELVRLAVEAAEEVQRNP---------SSSDVNEALKLIVEAIEAGDPEVRELARELVRLAVEAAEEVRNPSSEEVNEALKKIVKAIQEAVESLREAESGDPEKREKARERVREAVERAEEVQRDPSGWLE----- | |||||||||||||
4 | 4avmA | 0.13 | 0.11 | 3.87 | 1.06 | FFAS-3D | -EKVLQKLGK-AVETKDERFEQSASNFYQ---QQAEGHKLYKDLKNFLSAVKVMHESSKRVSETLQEIYSSEWD-GHEELKAIVWNNDLLWEDYEEKLADQAVRTMFSEIKERIAKRGRKLVDYDSARHHLEAVQ-----NAKKKDEAKTAKAEEEFNKAQTVFEDLNQELLEELPILY--------NSRIGCYVTIFQNISNLRDVFYREM-------SKLNHNLYEVMSKLEKQHS------------ | |||||||||||||
5 | 4bm5A | 0.12 | 0.08 | 2.84 | 0.29 | HHpred | ------------------------------------------------------AVYPVILQEMYRQYLIQSFASRTE-KERLFNNLAH------------LGNILGAIHSNIGSVIYKTYASQALT--N---------NRLEEKDIEFLRNIQNMLSMDEATCRTLLQETKEARAGFLFDKI-FMAEAVAEFRRVRRVRAFREIEHAIENSGISQVLLDCIQDRCEALIVQAAASQRRQEGAARDLSR- | |||||||||||||
6 | 5cwqA | 0.15 | 0.13 | 4.45 | 0.79 | MUSTER | -----------------EELERESEEAERR------LQEARKRSEEARERGDLKELALIEEARAVQELARVACERNSEEAERASEKAQRVLEEARKVSEEAREQGDDEVLALALIAIALAVLALAEVAC-----CRGNSEEAERASEKAQRVLEEARKVSEGDDEVLALALIAIALAVLALAEVACCRGNKEEAERAYEDARRVEEEARKVKESAEEGDSEVKRLAEEAEQLAREARRHVQECRGGWLEH | |||||||||||||
7 | 3woyA | 0.12 | 0.09 | 3.28 | 0.76 | CNFpred | ----------------EETLNKIREILSDDKHDWDQRANALKKIRSLLVAGAAQYDCFFQHLRLLDGALKLSA--RSQVVREACITVAHLSTVLGDHGAEAIVPTLFNLVPNSAKVMATSGCAAIRFIIRHTHVP------------RLIPLITSNCTSK---SVPVRRRSFEFLDLLLQEWQTHSLEHAAVLVETIKKGIHD--------------ADAEARVEARKTYMGLRNH---FPGEAETLYNS | |||||||||||||
8 | 2pffB | 0.13 | 0.12 | 4.20 | 0.99 | HHsearch-2 | ---MDAYSTRPLTSLEPTASFQLQEQFPTEGFAPTTPAELVGKFLGYVSSLEPSKVGQFQVLNLCLTEFENCYLEGNDIHALAAKLLDTTLVKYFEELRDLYQTYHVLV-GDLIAETLSELIRTTLDFTQLEWLENPS----NTPDKDYLLSIPISCPLIGFTPGELRSYLLVTAVAIA---ETDSWESFVSVRKAITVLFFIGVRCYEAYPNTSSNLTQEQVQDYVNKTNSHLPAVEISVNGAKNLVVS | |||||||||||||
9 | 5nnvA | 0.09 | 0.08 | 3.18 | 0.90 | Neff-PPAS | ---------------AKEEELAESSAISAKEAKIEDTRDKIQALDESVDELQQVLLVTSEELEKLEGRKEVLKERKKNAVQNQEQLEEAIVQFQQKETVLKEELSKQEAVFETLQAEVKQLRAQVKEKQQ--------LSNELTELKIAAAKKEQACKGEEDNLARLKKELTETELALKEAKEDLSFLTSESSSTSGEEKLEEAAKHKLNDKTKTIELIALRRDQRIKLQHGLDTYERELKEKRLYKQKT | |||||||||||||
10 | 2p9xA | 0.15 | 0.06 | 2.01 | 0.46 | HHsearch | -------------------------------------------------------------------------------------------SKGRDILTKTIILALRE-VAPGLEAVLEAHLRATLNS-GIELYDD--------P-QKFKEAVSKLFGEY--SARLLEMVIISKLKGRL--GEDIEANSLEELVSEIRKIYGE----------------------------------------------- | |||||||||||||
|
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |