>PF06675 (271 residues) RIKGSKGTTDFIKAVVKGRNGKSQGGSAPTLGIIGRLGGLGARPERIGFVSDGDGALAAV AAALKLANMQHKGDVLEGDVIIATHICPDAPTQPHDPVPFMDSPVDIAEMNRNEVDPAMD AILSVDTTKGNRVINHRGFAISPTVKEGYILRVSEDLLDLMQIVTGKLPVVFPITTQDIT PYGNGIYHLNSILQPSTATAAPVVGVAITAEVPVPGCATGASHLIDIEAAVRFCLEVAKA FGQGKCRFYDEEEFERLKELYGPMNHLQTLG |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | RIKGSKGTTDFIKAVVKGRNGKSQGGSAPTLGIIGRLGGLGARPERIGFVSDGDGALAAVAAALKLANMQHKGDVLEGDVIIATHICPDAPTQPHDPVPFMDSPVDIAEMNRNEVDPAMDAILSVDTTKGNRVINHRGFAISPTVKEGYILRVSEDLLDLMQIVTGKLPVVFPITTQDITPYGNGIYHLNSILQPSTATAAPVVGVAITAEVPVPGCATGASHLIDIEAAVRFCLEVAKAFGQGKCRFYDEEEFERLKELYGPMNHLQTLG | |||||||||||||||||||
1 | 3n5fA1 | 0.14 | 0.11 | 3.77 | 0.88 | SPARKS-K | GLFVYEDAAGNLIGRKEGTN-----PDATVVLVGSHLDSV----YNGGCF---DGPLGVLAGVEVVQTMNEHGVVTHHPIEVVAFTDEEGARFRFGTLPRDAEGISLAEAMKQRKPGTVKAYVELHIEQGRVLEETGLPVGIVTGIV----LCSDEVKRAAEAACQKLSFWLPSAAHDSVQLAPIC---------------PIGMIFVRSQDGVSHSPAEWSTKEDCAAGAEVLYHTVWQLAQG--------------------------- | |||||||||||||
2 | 4r12A | 0.13 | 0.11 | 3.85 | 0.50 | FFAS-3D | -----------IWSSFSSKIDK----EKEIILVMLPFDTTAFFRDLIGADQSSFATVTLLSVIKSLAAVDRSS--WNKEVVFAFWNAFQCKTYNSDKSKCIDPPRADLAFQTQINFTKISTIIELNQIGRAQLDKNLGKYS------LYLHTATSSVTDILDQVASSYTITFKPTTQTELPPSSSMSFLKK------TNKIPVVVITDHDYKYSNPYYGYEQLGSTLNDIVYILSTFIDRIAGGNNNIIDKNFINILYPCF---------- | |||||||||||||
3 | 2q43A1 | 0.12 | 0.09 | 3.12 | 0.34 | HHpred | -----VAIT-GVIGYIGTG-------EPPFVALRADMDALPIQEGVEGKMCGHDGHVTMLLGAAKIL--HEHRHHLQGTVVLIFQPAEEG-----------L--SGAKKMREEGALKNVEAIFGIHLSARGKAASRAGSFL---------TVNNKDLYKQFKKVLGQEAFV----EAAPVM---GSEDFSYFAE-----TIPGHFSLLGMQDASSHSPLYRINEDVLPYGAAIHASMAVQYLKEKA------------------------- | |||||||||||||
4 | 4ewtA1 | 0.16 | 0.12 | 3.93 | 0.61 | MUSTER | EVETNVGPR--IKVTIDS------GKPGKTLAIRAEDTGLSFASQNKGVM-GHDAHTAYMLVLAETLAEM--KDSFTGKVVVIHQPA--------------VPPGGAKTMIENGVLDGVDHVLGVH----VMSTMKTGKVY---YRPGYVLYNDPEFTEYVAKTLKEANLDFGVE--MCEPQPPS--DFAYYAKER-----PSAFIYTGAAVENGEIYHPNISEKSLLISAEAVGTVVLDYLK---------------------------- | |||||||||||||
5 | 3b3tA | 0.12 | 0.09 | 3.15 | 0.89 | CNFpred | QVSHSGYNQKSVVMTITGSEAP-----DEWIVIGGHLDSTI-QSVAPGADDNASGIAAVTEVIRVLSENN---FQPKRSIAFMAYAAEEV-------------LRGSQDLANQYKGKNVVSALQLDMT-NYKGSAQDVVFITDYTDSN----FTQYLTQLMDEYLPSLTYGFDTCG--------YACSDHASWHNAG---YPAAMPFESKFDYNPRIHTQDT-GSHAKKFTQLGLAYAIEMGSATG------------------------- | |||||||||||||
6 | 2q43A1 | 0.11 | 0.08 | 3.03 | 0.38 | HHsearch-2 | KYRYPVAIT-GVIGYIGTG-------EPPFVALRADMDALPIQEGMHACGH--DGHVTMLLGAAKILH--EHRHHLQGTVVLIFQPAEEG-----------L--SGAKKMREEGALKNVEAIFGIHLSARGKAASRAGSFL---------TVNNKDLYKQFKKVLGQEAFV----EAAPVMGSEDFSYFA---E-----TIPGSLLGMQDEYASSHSPLYRINEDVLPYGAAIHASMAVQYLKEKAS------------------------ | |||||||||||||
7 | 4faiA | 0.07 | 0.06 | 2.41 | 0.66 | Neff-PPAS | --IKGKLHFHNIIATLNPN-------AERYLVLSCHYDSKYMPGVFLGATDSAVPCAMLLNLAQVLQEQLKPLKKSKLSLMLLFFDGEEAFEEWGPKDSIYGARHLAKKWHHEGKLDRIDMLVLLD---------------LLGAPDPAFYSFFENTESWYMRIQSVETRLAKLQLRYFQSQAMRSSFIEDDHIPFLRRNVPILHLIPVPFPSVPDDNASVIDYATTDNLALIIRLFALEYLLA--------------------------- | |||||||||||||
8 | 3ic1A1 | 0.12 | 0.09 | 3.14 | 0.34 | HHsearch | QIEPFNDTLN-LWAKHGT--------SEPVIAFAGHTDVVPTGDEFSAEIIDGRGAAGSLAAMIVAAEYVKANPNHKGTIALLITSDEEA-----------TAKDGTIHVVETLRDEKITYCMVGEPSSAKNLVVKNGRFLTKP------GKLLDSITSAIEETIGITPKAET------GGGTSDGRFIAL-------MGAEVVEFGPLNS--TIHKVNECVSVEDLGKCGEIYHKMLVNLLD---------------------------- | |||||||||||||
9 | 2vepA | 0.22 | 0.17 | 5.35 | 0.60 | SP3 | -----MSKLELLPAVDV-RDGQLVHGESGTETSYGSPLEAGA--EWLHLV-DLDAAFGTGDNRALIAEVAQA---MDIKVELSG---------------GIRDDDTLAAALATGCT-----RVNLGTAALEKVIAEHGIAVGLDVRGTTLTRDGGDLYETLDRLNKEGCARYVVTDKDGTLQGPNLELLKNVCA---ATDRPVVASG------------GVSSLDDLRAIAGLVPAVGKALYAKAF---TLEEALEATS------------ | |||||||||||||
10 | 5i4mA2 | 0.12 | 0.10 | 3.41 | 0.89 | PROSPECTOR2 | ALDTSIKVDEVAKIGATPKGGVCRLALTTMGNVFMRRAGRVADAAPVVTGSDGIYGVLGGLEVIRS--LNDHGIETEHPVEVV--IWTNEEGSRFAPAMVFAGVFPLEYGLSRKDVDKLHAAFELHIEQGPILEAEKTIGVVTDA-------FDSACVAAVRAAFGYSHRDIV------SGAGHDACYLA--------QVAPTSMVFVPCIDGISHNEIEDATPAWIEAGANVLLHAMLSR-------------------------ACEPV | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |