>PF06593 (274 residues) MSKKAVPPIVKAQYELYNRKLNRAIKVSGSQKKLDASFVGFSESSNPETGKPHADMSMSA KVKRVNTWLKNFDREYWDNQFASKPIPRPAKQVLKGSSSKSQQRDEGEVVFTRKDSQKSV RTVSYWVCTPEKSMKPLKYKEDENVVEVTFNDLAAQKAGDKLVSILLEINVVGGAVDDKG RVAVLEKDAAVTVDYLLGSPYEAINLVSGLNKINFRSMTDVVDSIPSLLNERKVCVFQND DSSSFYIRKWANFLQEVSAVLPVGTGKSSTIVLT |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | MSKKAVPPIVKAQYELYNRKLNRAIKVSGSQKKLDASFVGFSESSNPETGKPHADMSMSAKVKRVNTWLKNFDREYWDNQFASKPIPRPAKQVLKGSSSKSQQRDEGEVVFTRKDSQKSVRTVSYWVCTPEKSMKPLKYKEDENVVEVTFNDLAAQKAGDKLVSILLEINVVGGAVDDKGRVAVLEKDAAVTVDYLLGSPYEAINLVSGLNKINFRSMTDVVDSIPSLLNERKVCVFQNDDSSSFYIRKWANFLQEVSAVLPVGTGKSSTIVLT | |||||||||||||||||||
1 | 4lq8A | 0.12 | 0.11 | 3.88 | 0.71 | SPARKS-K | DSQTSDPTIIQPQKDNLIEQILKDLAALTDRDLEQKRKEIEEEKEKDKTLSTFFGNPIDKALPELKKKLESIEIAGYKNVHNTFSAASGYPGGFKPVQWENHVSASDLRATVVKNDAG--DELCTLNETTVKTKPFTLAKQDGTQVQIEID--FPIKLDQADGSMHLSMVAL----KADGT-KPSKDKAVYFTAHYEEGPNGKPQLKSSPKPLKFAGTGD----------DAIAYIEHGG---EIYTGKYKEMMKEVELNQGQSVDLSQAEDII | |||||||||||||
2 | 5voxO | 0.11 | 0.10 | 3.66 | 0.46 | FFAS-3D | FKIGSLDTLIVESEELSKGKIIEILNAYRTLPINNMPVPEYLENFQWQTRKFKLDKSIKDLITLISNESSQLDADVRATYANYNSAKTNLAAAERKKTGDLSVRSLHDIVKPEDFVLNSEHLTTVLVAVPKSLKSDFEKSYET---------------------------LSKNVVPASASVIAEDAEYVLFNVHLFKKNVQEFTTAAREKKFIPREFNYSEELIDQLKKEHDSAASLEQSLRVQLVRLAKTAYVDVESVLRYGLPPHFNIKI- | |||||||||||||
3 | 6evuA | 0.16 | 0.11 | 3.63 | 0.33 | HHpred | --------------EPYEKEVAEYNKH-----KNENSYLVFDQSVVTIKGGK----FIKAT-----DFNKVNA---------G--DSKDIFTKLRKDGGKATGNFQNSFVKEAN----LGSNGGYAVLL-----------EKNKPVTVTYTGLNASYLGRKITKAEFVYELQSSPSQSGTLNAVFSNDPIITAFI--GTNRVDVLPDKDSFAYALSSLNSSGGHAEFVFNNAFKYINGSY---------------------------------- | |||||||||||||
4 | 3cvzA | 0.18 | 0.16 | 5.20 | 0.52 | MUSTER | TGTQG---VVKNDWKKAVKQLQDGLKDN-SIGKITVSFNDGVVEVAPKSANKKADRAAEKLYNLVNTQLDKLG-DYVD--FS---VDYNLENKIITNQ------ADAEAIVTKLNSLN------------EKTLIDIATKDTFGMVSKTQDSEGKNVAATKALKVVATFGLKSGGSEDTGYVVEMKAGA---VEDKYGKVGDS----TAGIAINLPSTGLEYAGKGTTIDFNKTLKVDVTGGSTPSAVAVSGFVTKDDTDLA-KSGTINVRVIN | |||||||||||||
5 | 4dngA | 0.11 | 0.07 | 2.39 | 0.67 | CNFpred | ----------DDIIMMIARETGGTII------------------------------KSTIELEQTIAILDE-----AMTYTGELGGVKEVPSDI-----------------------EGKTNKIYRLPL--------------GVISSISP-------FNFPMNLSMRSIAPAIA---LGNSVVHKPDTAISGGTIIAKAFEHAGLPAGVLNVMLTDVKEIGDGMLTNP-IPRLISFTGS---TAVGRHIGEIAGRA--------FKRMALELG | |||||||||||||
6 | 1vt4I | 0.18 | 0.17 | 5.46 | 1.12 | HHsearch-2 | MSKDAV----SGTLRLFWTLLSKQKFVEEVLRI------NYKFLMSPIKTERQP--SMMTRMYRDRLYNDNQVFAKYNVSRLQQAELRPAKNVLIDGVLGS-----GKTWV-ALDVQCKMDFKIFWLNLKNCTVQKLLYQIDPNWHSIQAELRRLLKSKPYENCLLVLLNVAWNAFNLSCKILLTTRFKATTTHISLDHHSMTLTLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATVNCDPAEYRKMFDRLLHKYSLVEK--QPKESTISIP | |||||||||||||
7 | 3cvzA | 0.13 | 0.12 | 4.04 | 0.76 | Neff-PPAS | TTGTQGYTVVKNDWKKAVKQLQDGLKDN----SIGKITVSFNDGVVGEVASANKKADRDAAAEKLYNLVNTQLDKLGDGDYVDFSVDYNLENKIITN--------QADAEAIVTKLNS----------LNEKTLIDIATKDTFGMVSKTQDSEGKNVAATKKVKDVATFGLKSGGSEDTGYVVEMKAGAV-------EDKYGKVGDSTAGIAINLPSTGLEYAGKGTTIDFNKTLKVDVTGGSTPSAVAVSGFVTKDDTDLA-KSGTINVRVIN | |||||||||||||
8 | 2kdoA2 | 0.16 | 0.08 | 2.68 | 0.47 | HHsearch | -----------------FRDI--------------ATIVA-DKCVNPETKRPYTV-------ILIERAMKD-------IHYSVK-TNKSTKQQALEVIKQLK------EKMKIERAHM-----RLRFILPVNEGKKLKEKPLIK--VIESEDYG----Q---Q-LEIVCLIDPGCFRE------------ID-E-LIK------KETKGKGSLEVLNLVEEGDEKFE----------------------------------------------- | |||||||||||||
9 | 5n8oA5 | 0.10 | 0.09 | 3.50 | 0.54 | SP3 | EIVRQTPELREAVYSLINRDVERALSGLESVKPSQVPRLEGAWAPEHSVTEFSHSQEAKLAEAQQKAMLKGEA--------FPDIPMTLYEAIVRDYTGRTPEAREQTLIVTH--LNEDRRVLN--SMIHDAREKAGELGKEQVMVPVLNTANIRDGELRRLSTWEKNPDALALVDNVYHRIAGISKDDG-LITLQDAEGNTRLISPREAVAEGVTLYTPDKIRVG---TGDRMRFTKSDRERGYVANSVWTVTAVSGDSVTLSDGQQTRVIRP | |||||||||||||
10 | 5a99A | 0.09 | 0.07 | 2.80 | 0.89 | PROSPECTOR2 | AYHGAPHEIRNRYQHDRALEILDRQYSRDSYYMKDSSLQIIRQLVLPNYRINDEKYYGRSELRHLRDGLLSDNGG-------------------RSQHDKGMNEPVSFQFIVQGDVDLGSVWFRVNKYNNISSSSFAMEAVSERAENYIGPLMRPIRYFDREMAWSYVGKFDGILFPCHPVISFA----------VQRANRDGAGLYNGEN---------IYKTLIRLNDSPDLYAHYDD-----EETSVANYWTRFQYLYRTKCDI-----AV | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |