>PF06504 (272 residues) KHDLTHARHDPAHCLAPGLFRSLKRGERKRGKLDVVYDYGDGKRIEFSGPEPLGADDLRI LQGLVAMAGPGGLVLSPEPQTEAGQQLRLFLEPKWEAVQQDAMVVKGSYRALAREIGYAN PDDTKPVRECIERLWKVSIIAQNGRKRQGFRLLSEYASDEQDGKLYVALNPLIARAVMGG AQHVRIDMDEVRALQTDPARLMHQRLCGWIDPGKSGRVELDTLCGYAWPSKANENAMKRR RGIARKAIPELAALGWTVSEYAKNKFEIGRPK |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | KHDLTHARHDPAHCLAPGLFRSLKRGERKRGKLDVVYDYGDGKRIEFSGPEPLGADDLRILQGLVAMAGPGGLVLSPEPQTEAGQQLRLFLEPKWEAVQQDAMVVKGSYRALAREIGYANPDDTKPVRECIERLWKVSIIAQNGRKRQGFRLLSEYASDEQDGKLYVALNPLIARAVMGGAQHVRIDMDEVRALQTDPARLMHQRLCGWIDPGKSGRVELDTLCGYAWPSKANENAMKRRRGIARKAIPELAALGWTVSEYAKNKFEIGRPK | |||||||||||||||||||
1 | 2nraC | 0.14 | 0.11 | 3.75 | 1.91 | SPARKS-K | --------------------------------------VNKKTKIRHRTLAQLPLPAKRVMYMALALI---------DSKEP----------------LERGRVFKIRAEDLAALAKITPSLAYRQLKEGGKLLGASKISLRGDDIIADLNIIEWIAYSPDEGYLSLKFTRTIEPYISSLIGFTTQLLTASLRLSSQYSSSLYQLIRKHYSNFKYFIISVDELKEELIADKKYPDFPIFKRDVLNKAIAEIKKKTVGFTVHEKEKFEFVVDE | |||||||||||||
2 | 2nraC | 0.13 | 0.10 | 3.44 | 1.79 | FFAS-3D | ---------------------------------------NKKTKIRHRTLAQLPLPAKRVMYMALALIDSKEPLERGRV-------------------------FKIRAEDLAALAKITPSLAYRQLKEGGKLLGASKISLRGDDIIADLNIIEWIAYSPDEGYLSLKFTRTIEPYISSKNKFTTQLLTASLRLSSQYSSSLYQLIRKHYSNFKKKIISVDELKEELIIEYKYPDFPIFKRDVLNKAIAEIKKKTGFTVHEKEGKFEFVVDE | |||||||||||||
3 | 2nraC | 0.14 | 0.11 | 3.66 | 2.25 | HHpred | ------------------------------NKKTKIRHRNELN----HTLAQLPLPAKRVMYMALALIDSKEP-------------------------LERGRVFKIRAEDLAALAKITPSLAYRQLKEGGKLLGASKISLRGDDEELDLNIIEWIAYSPDEGYLSLKFTRTIEPYISSLIKFTTQLLTASLRLSSQYSSSLYQLIRKHYSNFKYFIISVDELKEELIAYYKYPDFPIFKRDVLNKAIAEIKKTEISVGFTVEGKFEFVVDE | |||||||||||||
4 | 2z9oA | 0.15 | 0.11 | 3.61 | 1.43 | MUSTER | -----------------------------------------SNDL-TEAAYSLSRDQKRMLYLFVDQIRDG--------------------------------ICEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRPMRLSYIEKKVFSFRDIT | |||||||||||||
5 | 1repC | 0.15 | 0.11 | 3.70 | 1.60 | CNFpred | -----------------------------------------SPRIVQSND-SLSRDQKRMLYLFVDQIRKS-----------------------------HDGICEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFY-----ESFPWFIKPAHSPSRGLYSVHINPYLIPFFIGLNRFTQFRLSETKEITNPYAMRLYESLCQYRKPSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRPMRLSYIEKTHIVFSFRD | |||||||||||||
6 | 2z9oA | 0.14 | 0.10 | 3.50 | 2.68 | HHsearch-2 | -----------------------------------------SNDLTE-AAYSLSRDQKRMLYLFVDQIR-D-------------------------------GICEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQRFTQFRLSETKEITNPYAMRLYESLCQYRKSG-IVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSTPMRLSYIKKGRFSFRDIT | |||||||||||||
7 | 2z9oA | 0.15 | 0.10 | 3.47 | 1.67 | Neff-PPAS | ---------------------------------------------------SLSRDQKRMLYLFVDQIRD--------------------------------GICEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGQNRFTQFRLSETKEITNPYAMRLYESLCQYRDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTLSYIEKKKGVFSFRDIT | |||||||||||||
8 | 2z9oA | 0.14 | 0.10 | 3.40 | 4.30 | HHsearch | -----------------------------------------SNDL-TEAAYSLSRDQKRMLYLFVDQIR-D-------------------------------GICEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQRFTQFRLSETKEITNPYAMRLYESLCQYRKSG-IVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSTPMRLSYIKKGRQTTHDI- | |||||||||||||
9 | 1repc | 0.15 | 0.11 | 3.70 | 2.02 | PROSPECTOR2 | SP-----------------------------------------RIVQEAAYSLSRDQKRMLYLFVDQIRKS-----------------------------HDGICEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYE-----SFPWFIKPAHSPSRGLYSVHINPYLIPFFIGLQRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSTPMRLSYIEKKVFSFRDIT | |||||||||||||
10 | 2nraC | 0.13 | 0.09 | 3.07 | 2.12 | SAM | ----------------------------------------------NHTLAQLPLPAKRVMYMALALIDSK---------------------------LERGRVFKIRAEDLAALAKITPSLAYRQLKEGGKLLGASKISLRGDDEELDLNIIEWIAYSPDEGYLSLKFTRTIEPYISSLIKFTTQLLTASLRLSSQYSSSLYQLIRKHYSNF-YFIISVDELKEELIAYYKYPDFPIFKRDVLNKAIAEIKKTEISVGF------------ | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |