>PF06485 (278 residues) WELDFYSRPILDENKKKVWEVLICESPLEVRDEPDSTFRYAQYCSNTQVNSVWLRQALEE AMAQSGQSPQKIRFFRTQMNNMITKACNDLGISVTPSRRTFTLNRWIEERMREVYPNHPG FQANAPNPSVQMPTQAPESLPDALVGQQWAFVTLEASAFEEMHEWEIDFREAFPLKNLGI TADTKIPGLIIFSPRALPLAGWLSGLDLGSIKIDSEKDRLLLETGVSDRWILANLKERAL LTEAKGFEQAKQKAQGVHFLAVQSDPQAESFAGFWLLQ |
![]() | |
|
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | WELDFYSRPILDENKKKVWEVLICESPLEVRDEPDSTFRYAQYCSNTQVNSVWLRQALEEAMAQSGQSPQKIRFFRTQMNNMITKACNDLGISVTPSRRTFTLNRWIEERMREVYPNHPGFQANAPNPSVQMPTQAPESLPDALVGQQWAFVTLEASAFEEMHEWEIDFREAFPLKNLGITADTKIPGLIIFSPRALPLAGWLSGLDLGSIKIDSEKDRLLLETGVSDRWILANLKERALLTEAKGFEQAKQKAQGVHFLAVQSDPQAESFAGFWLLQ | |||||||||||||||||||
1 | 3hbjA | 0.12 | 0.11 | 3.92 | 0.70 | SPARKS-K | HAAPLLSLVKKIATEAPKVTFSFFCTTFSRSNEFLPNIKYYNVHDGLPAMQENFKHVIDEAVAETGKNITCLVTDA--FFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGVHDVKSIDVLPGFPELKASDLPEGIKDIDVPFATMLHKMGLELPRANAVAINSFA----TIHPLIKFKLLLNVGPFNLTCLEWLDQH---------ENSSVVYISFGSV----VTPPPHELTALAESLEE-----CGFPFIWSFRGDPKEKLPKGFLER | |||||||||||||
2 | 5xf7A | 0.12 | 0.10 | 3.55 | 0.62 | FFAS-3D | ------TKPVHILEERSLLVLTPATQMLN-----QTRFLMVLFHNPSSKQSRNLAEELGKAVEIMGKGKNGIGFGK-VDITIEKELQQEFGITKAPEVESAALVVWLRRQIS--------------QKAFLFNS--SEQVAEFVISRPLVIVGFFAELFYDVIKDFPELTFVITIGNVIGRFHVTLDSVLVFKKGKQELNRVIKQHLTDFVIEELHIMSHML--------LFVSKSSESYGIIIQHYKLASKEFQNILFILVDADEPR---------- | |||||||||||||
3 | 1c0mC | 0.15 | 0.10 | 3.39 | 0.53 | HHpred | WQTDFTLEPRM--AP-RSWLAVTVDTA--------SSAIVVTQHG--RVTSVAVQHHWATAIAVLG-RPKAIKTDNGSCFTSTREWLARWGIAHTTGIPNRLLKDRIRVLAEG--------------------DGFMKRIPTSKQGE-------LLAKAMALNHKERGENTKTPIQKWPTVLTEG-P--PVK-IRI-ETGEWEKG---WNVLV-WGRGYAAVKNRDKVIWVPSRKV------------------------------------------ | |||||||||||||
4 | 2vg8A | 0.13 | 0.12 | 4.00 | 0.70 | MUSTER | LTVTFVIAGVLDSLPSSISSVFL--PPVDLTDLSSSTRIESRISLTVTRSNPELRKVFDSFVEGG-RLPTALVV---LFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTEP-LMLPGCVPVAFLDPAQDRKDDAYKWLLHNTKRYKEAEGNAIKALQEPGLDKPPVYPVGPLVNIGK-ESECLKWLDN---------QPLGSVLYVSF------GGTLTCEQLNELALGLADS------QRFLWVIRSPSGIANSSYFDSH | |||||||||||||
5 | 3votA | 0.10 | 0.09 | 3.16 | 0.75 | CNFpred | -----------------GLKVTFFYNSAEDFPGNLPAVERCVPLPLF-EDEEAAMDVVRQTFVEF--PFDGVMTLFEPALPFTAKAAEALNLPGLPFTTMENCRNKNKTRSILQQ-------NGLNTPVFHEF-HTLADLENRKLSYPLVVKPVN-KELEEAVRK---VEAVNQRDLNRFV---GKTGIVAEQ--------FIDGPEFAIETLSINVHVLSIGYKGGVYIAPAQLKEETRLAIVKEVTGAVSALQGPAHTELRLDK----DGTPYVIE | |||||||||||||
6 | 1c0mC1 | 0.17 | 0.08 | 2.59 | 0.50 | HHsearch-2 | WQTDFTLEPRM--AP-RSWLAVTVDTA--------SSAIVVTQHG--RVTSVAVQHHWATAIAVLG-RPKAIKTDNGSCFTSTREWLARWGIAHTTGIPGERANRLLKDRIRVLADGFMALNHK---ERGEN-TKT---PIQKHWRPT---------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 1pc3A | 0.10 | 0.09 | 3.44 | 0.60 | Neff-PPAS | -TVNISDAYLMAAHKGLMNIALAISALPGVSEHLKLNGKVLAAMYQGTIKT-WDDPQIAALNPGVNLPGTAVVPLHRS----------------DGSGDTFLFTQYLSKQDPEGWGKSPGFGTTVDFPAVPGALNGNGGMVTGCAETPGCVAYIGISFLDQASQRGLGEAQLGNSSGNFLLPD------AQSIQAAAAGFASKTPANQAISMIDGPAPDGYPIINYEYAIVNNRQKDAATAQTLQAFLHWAITDGNVHFQPLPPAVVKLSDALIATIS | |||||||||||||
8 | 3kkrA | 0.15 | 0.07 | 2.44 | 0.66 | HHsearch | WQMDNTH-------WNKTIIWVAVETN--------SGLVEAQVIPE--ETALQVALCILQLIQRYTV-LH-LHSDNGPCFHRIENLCKYLGITKTTGIPYNRAHRDLKDRLAAYQGD-------------------CETVEAAL------------SLALSLNKKRGGIGGHTPYEI-------------YLESEHTKYQ------------------------------------------------------------------------------ | |||||||||||||
9 | 2vg8A | 0.12 | 0.10 | 3.66 | 0.70 | SP3 | SSISSVFLPPVDLTD-----------LSSSTRIESRISLTVTRS------NPELRKVFDSFVEGG-RLPTALVVD--LFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTEPLMLPGCVPGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGNAIKALQEPGLDKPPVYPVPLVNIGKQEESECLKWLDNQPLGSVLYVSFGSG-------------GTLTCEQLNELALGLADSEQR-----FLWVIRSPSGIANS-----S | |||||||||||||
10 | 1hnna | 0.08 | 0.06 | 2.30 | 0.78 | PROSPECTOR2 | AVASAYQ----RFEPRAYLRNNYAPPRGDLCNPNGV--------------GPWKLRCLAQTFATGEVSGRTLDITLEVNRQELGRWLQEEP----GAFNWSMYSQHACLIE-------------------------GKGECWQ-------------DKERQLRARVKRVLPIDVHQPQPLGAGSPAPLALVSSPDLASFQRALDHITHLLLIGALEESWYLAG---EARLTVVPVSEEEVREALVR--------SGYKVRDLRTQTGVDDVKGVFFAL | |||||||||||||
|
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |