>PF06300 (263 residues) NYWTKLSIEYANQKSYLDDLFKVYPTIPNGIRDIDNKIWENIKTSFNNQNNKKLIENLLK LDLFPIKDSYIAYLRKDKTAIDRNPETIDRLAGRIYDMGIDEVYKQCTKPKETNRQIGPM FKEWVNKGVLGKKPIEIDEFINTENNAILSGSDQEMEEFAEDYCDYEYAGNTKKGLDFIA RFNKKYVIGEAKFLTDIGGHQNAQFNDALNVLDSNVSEKVTKIAILDGVLYIKNERTKMY RTTVQKNDNIMSALILNEFLYSI |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | NYWTKLSIEYANQKSYLDDLFKVYPTIPNGIRDIDNKIWENIKTSFNNQNNKKLIENLLKLDLFPIKDSYIAYLRKDKTAIDRNPETIDRLAGRIYDMGIDEVYKQCTKPKETNRQIGPMFKEWVNKGVLGKKPIEIDEFINTENNAILSGSDQEMEEFAEDYCDYEYAGNTKKGLDFIARFNKKYVIGEAKFLTDIGGHQNAQFNDALNVLDSNVSEKVTKIAILDGVLYIKNERTKMYRTTVQKNDNIMSALILNEFLYSI | |||||||||||||||||||
1 | 4qjbA | 0.11 | 0.11 | 3.81 | 0.68 | SPARKS-K | DKNGKKVQKNNLNDEIKIIFTDLDGTLLNSENKVSEQNLESLIRAQEKGIVENVIGEHVKKNRISLLPGIYMNGEKGSRVIDRINDLKMEIHEFSKQINISKYAIWFCLEKTYCFEINDCIREYMEVEALNPDVIEDNMLEGLTVYKVLFSLPENILENTLKLCREKFSHR-----INVANTFQSYVELFHQ-----HTNKFEGVKEICKYYNISL-NNA--LAMGDTHSVGVHNASEKVKNSA--AYVGPSSHVLKTFCDI- | |||||||||||||
2 | 5cwnA2 | 0.13 | 0.05 | 1.84 | 0.71 | FFAS-3D | -------VEVASKEGDPELVLEA-----------AKVALRVAELAAKNGDKEVFKKAAESALEVAKRLVEVASKEGDPELVEEAAKVAEEVRKLAKKQGDEEVYEKA---RETAREVKEELKRWLEH---------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
3 | 1fokA2 | 0.15 | 0.08 | 2.68 | 0.27 | HHpred | ----------------------------------------------------------------------------------------------------------------------EEKKSELRHKYVPHEYIELIEI-ARNSTQ---DREMKVMEFFMKVYGYRGHLGGSRKPDGAIYTIDYGVIVDTKAYSG-GNLPIGQADEMQRYVEENQTKTEFKFLFVSG-HFKGNY-KAQLTRITNCNGAVLSVEELLIGGEMI | |||||||||||||
4 | 2w4mA | 0.14 | 0.11 | 3.79 | 0.62 | MUSTER | -----------------NLYFQ--SMGLSRVR-ID------TAGASRR--MLEVIKLLQS--KYHYKEEAEIICDKVQVKLSKECFHPYNTITDLRTSHWEEAIQETKGGAANRKLAEECYFLWKSTRLQHMTLAELTELRKEVRLLLLTNGDRQTQREKIEACACQSY------FD-------AVVVGG-----EQREEKPSIFYYCCNLLGVQPG-DCVMVG-LKATVWINKNGIVPLKSSPVPHYMVSSVLELPALLQSI | |||||||||||||
5 | 5mp7A | 0.14 | 0.10 | 3.52 | 0.59 | CNFpred | ------------------DAFVLQSHP--------APLNQWLMEQL------IMIDALKRGSAITAILPFYPYARQDKKHRGREPISARLVADLLKTAGADRIVSVD-DGPVDHMRAQKLLTGYIGEHY-------------DEDMVVVSPRVRVAEKWADSLG---------VPLAFIHKT-GKTCILTDDMIDT-----GGTIAGAVNLLRED---GAKDVIIAATHGVLSDPAPQRLAEC---REVIVTNTLPITEDKRF | |||||||||||||
6 | 1vt4I | 0.17 | 0.15 | 5.02 | 0.74 | HHsearch-2 | KTWVALDVCLKNCNSPLQKLYQIDPNWT-SRSDHSSNIQAELRRLLKSKPNAKAWNAFTTLHHSTLTPLLLKYLDCPREVLTTNPRRLSIIAESIRDGKLTTIIESSLEPAEY----RKMFDRLSVFPPSAFDVIKSNKLEKPKESTISIPS-IYLELKVKLENEYALHIKTFDSDDLIPPYLDQYFY-------------SHIGHHLKNIEH-PERMTLFRMVFLDF-RFLEQK-IRHDSTAWNASGSILNTLQLKFYKPYI | |||||||||||||
7 | 2grmA | 0.08 | 0.08 | 3.12 | 0.67 | Neff-PPAS | ---VEELSKFSERLGVFFEILNRAGMNTKSVNET-GKEKLLISKIFTNDLFDKNFQRIEPKRLTSLQYFSIYLGYISIAHHYNIE------VPTFNKTITSDLKHLYDKRTTFFGIDYEIVSNLLNVLMYPIVDSFGKDYDLTIQTVLKNALMNRNLKEAQYYINQHLKTIKNISINGCYDLEINYLKQIYQFLTDKNIDSYLNAVNIINIFKIIGKEDIHRSLVEELTKISAKEKFTPPKEVTMYYENYVAIENNPIPEIKE | |||||||||||||
8 | 1gefA | 0.14 | 0.06 | 2.06 | 0.44 | HHsearch | -----------------------------------------------------------------------------------------------------------------MYRKGAQA-------------------------------ERELIKLLEK-HGFAVRSAGSKKVDLVAGNGKKYLCIEVKVTKKDHLVGKRDMGRLIEFSRRFG-GIPVLAVKFLNVGWRFIEVSPKIEKFTPS-----SGVSLEVLLGI- | |||||||||||||
9 | 2w4mA | 0.11 | 0.10 | 3.40 | 0.59 | SP3 | ----NLYFQSMGLSRVLDNLIDTAGASRRGMLEVIKLLQSKYHYKEEAEIICDKVQVKLSKECFHPY---------NTCITDLRTSHWEEAIQETKGGAAEECYFLWKSTRLQHMTLAEDVKAMLTELRKEVRL------------LLLTNGDRQTQREKIEACACQSYFD-------------AVVVGG-----EQREEKPA--PSIFYYCCNLLGVQPGDCVMVGGTVWINKNGIVPLKSSPVPHYMVSSVLELPALLQSI | |||||||||||||
10 | 4nv0A | 0.06 | 0.05 | 2.35 | 0.82 | PROSPECTOR2 | RLRLQDIPALTQDHCRMRD---------------PAEVERIINEFVIGGAVPSSFGIFNACQSLPENKAETDKLYHKYRPIEIDPHMPIAEKVQYMIEWWTKSGELTSGFPFDQSEIDQIASKYTHALRDRTHEFFADLQRLGIPTLVFSAGLGNSVVSVLRQANVL-----HPNVKVVLQFRDGLLDGFQQHTFNKNETVLNETSEYYDLVHTRDGVPASSHIM--KIGFLFDHVEANMKKYMDTFDIVLVSLIEKQHKLNL | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |