>PF06217 (282 residues) MDDDGLNMRNWGYYEQPSLKGHLGLQLMSSMAERDTKPFLSGRDHGVILNPNGAFHPRDC AVSEAPVHMDYVRDSWVNHRDKFLNMLPGNPNFMVYPEPSATHPMQILQPPDTSNDERVV MEDQGVRKEGESLKKRTGGSTPKAPKPKKTKKGPSVPKENGNSSVQRAKPAKKNMDVVIN GIDMDISGIPIPVCSCTGTPQQCYRWGCGGWQSACCTTTISIYPLPMSTKRRGARIAGRK MSQGAFKKVLEKLASEGYNFSNPIDLRTHWAKHGTNKFVTIR |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | MDDDGLNMRNWGYYEQPSLKGHLGLQLMSSMAERDTKPFLSGRDHGVILNPNGAFHPRDCAVSEAPVHMDYVRDSWVNHRDKFLNMLPGNPNFMVYPEPSATHPMQILQPPDTSNDERVVMEDQGVRKEGESLKKRTGGSTPKAPKPKKTKKGPSVPKENGNSSVQRAKPAKKNMDVVINGIDMDISGIPIPVCSCTGTPQQCYRWGCGGWQSACCTTTISIYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLASEGYNFSNPIDLRTHWAKHGTNKFVTIR | |||||||||||||||||||
1 | 4btgA | 0.13 | 0.12 | 4.29 | 1.32 | SPARKS-K | KADAVGKVPPTAILEQTLAPSEH--ELFHHITTDFVCHVLSPLGFILPDAAYVYRVGRTATYPNFYALVDCVRASDLR---RMLTALSSVDSKMLQATFKAKGALA-----------PALISQHLANAATTAFERSRGNFDANPSTPKELDPSARLRNTNGIDQRGRAEVIFSDEELSSTIIPFKLRPINE-TTSYIGQTSAIDHMGQPSHVVVYEDWQFAKEITAFTPVKLANNSNQRDVEPGISDRMSATLAPIGNTFAVSAFVKNRTASNGAEMTLGFP | |||||||||||||
2 | 1maeH | 0.08 | 0.08 | 3.10 | 1.55 | Neff-PPAS | -SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQILGHDVDAISVAQDGGPDLYALSAGTEVLDQDQSTVELGSGPQVLSV | |||||||||||||
3 | 2nbiA1 | 0.11 | 0.10 | 3.74 | 1.29 | PROSPECTOR2 | QPSDLNPSSQLPYSDASRPPSCLSFGRPDCDVLPTPQNINCPRCCATECRPDNPMFTPSPDGSPPIC-------SPTMLPTNQPTPPEPSSAPSDCGEVIEECPLDTCFLPTSDPARPPDCTAVGPFECSPDNPMFTPSPDGSPPNCSPTMLPTPQPSTPTVITSPAPSSQPSQCAEVIEQCPIDECFLPYG---DSSRPLDCTDPAVNNCPACCCRPDNPMFTMPSPEPSSQPSDCGEVIEECPIDACFLPKSDSARPPDSPTMLPSPSPSAVTVPLTPTR | |||||||||||||
4 | 4btgA3 | 0.10 | 0.10 | 3.54 | 1.16 | SPARKS-K | GSARGLTQAFAIGELKNQLPLQFTRTFSASMTSRVGRTATYPFDANAVVSLDPSARLRNTGIDQLRSNLAAYQDMVKQRGRAEVIFSDEELSSTIIPLRPINETTSYIGQTSAIDHMGQPSHVVVYEDWQFA-KEITAFTPVKLANNSNQRFLDVEPDRMSATLAPIGNRGTVNSNGAEMTLGF------PSVASNDLAAVMHYAVAHNPEVVVSEHQGGSLYLVWNVRTELRIPVGYNAIEGGSIREPLEAIAYNQPSEVKVLDLANHTTSIHIWP----- | |||||||||||||
5 | 5x6oG | 0.09 | 0.08 | 3.07 | 0.42 | FFAS-3D | -DDDDIGTRPPRFTQIPPSSAATQIEVTTTTLNNKQSKNDNQVNQLNKAQGEASM-LRDNIEREKEKNIQAVKVNELVKHLQELAKLKQELQKLEDEKKFLQRGKSKREVITNVK------PPSTTLNTITPDSSSVAIEAKPQSPQSKKRKISDNLLKKNMVPLNPNRIIPDETSLFLESI---------LLHQIIGADLSTIE-------------ILNRLKLDYITKFKNFVIAKGAPIGKSIVSLLLRCKK-----TLTLDIAVLIKEHPNESKLAV- | |||||||||||||
6 | 4ny2A | 0.16 | 0.13 | 4.24 | 0.40 | HHpred | ---------------------NASVEVIKVLNQGGVKAFYF----------NAWHLDGIGDENEALEALKLALDGH----------IVGNHSYDHMIHNCVADCHQIHSYQDPVRDAASFEQNLITLEK--YLP-TIRSYPNY----KGYELARLPYTDPANPSNIQVQNILANQGYQTHGWDVDWWGIPMPANSLTEALNSCFPCLHADK------VIVLTHDFLFED---GKRGMGATQNLPKLAEFIRIAKEAGYVFDTMDNYTPRWSVGKTYQYVLY- | |||||||||||||
7 | 2atyA | 0.11 | 0.10 | 3.71 | 0.85 | MUSTER | IGEKSLLCITKDKVDGTWDKPAPKCEYYSSCPEPIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWGPTRLPTCVSVFPLEGSIEGRGGSELADPEVPRDCGCKPCICTVPEVSSVFIFPPKPKDVLTITLTPKVDISKDDPEVQDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDW-----GKE--KCRVNSAAFPAPIEKTISKTKGPQLYTIPPPKEQMAKDKVS-------LT--MITDF---FPEDITVEWQWNGAENYKNTQ | |||||||||||||
8 | 1nisA | 0.22 | 0.05 | 1.46 | 0.43 | CNFpred | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ICIGVGGADAVDVMAIPWELKCPKVI---GVKLTGSLSPKDVILKVAGILTVKG----------------GTGAIVEYH | |||||||||||||
9 | 2pffB | 0.18 | 0.15 | 4.99 | 0.56 | HHsearch-2 | PFDKKLNILEWLENPSNTDKDYLSIPISGVIQLAHVTAKLLGFTPGEL----RSYLKGATGHSQGLVAVAIAETSWESFFKTVLFFIGV-RCYEAYPNTSLPPSIPMLNLTQEQVQDYVQVEISLVRKAKAPSGLDQ------SRIPFSERKLKF-SNRFASPFHSHPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL-----------RVLSGSISERIVDCLPVKWET--------------TTQFKATHILDFGPGLGVLTHRNKDGTGVRVIVA | |||||||||||||
10 | 2tmaA | 0.08 | 0.07 | 2.79 | 1.52 | Neff-PPAS | --EADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAE---------------------------KYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQ-------KLKYKAIS | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |