>PF06128 (275 residues) MSNHQETLPLNKTHHTVDFGANAYIIDHDSPYGYMTLTDHFDNAIPPVFYHEHQSFFLDN FKEVVDEVSRYVHGNQGKTDVPIFNTKDMRLGIGLHLIDFIRKSKDQRFREFCYNKNIDP VSLDRIINFVFQLEYHIPRMLSTDNFKKIRLRDISLEDAIKASNYEEINNKVTDKKMAHQ ALAYSLGNAKSDMALYLLSKFNFTKQDIAEMEKMNNNMYCELYDVEYLLSEDSANYKVLE YFIKGFNIKXXXLNIKSFDKIQSENIQTHKNTYSE |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | MSNHQETLPLNKTHHTVDFGANAYIIDHDSPYGYMTLTDHFDNAIPPVFYHEHQSFFLDNFKEVVDEVSRYVHGNQGKTDVPIFNTKDMRLGIGLHLIDFIRKSKDQRFREFCYNKNIDPVSLDRIINFVFQLEYHIPRMLSTDNFKKIRLRDISLEDAIKASNYEEINNKVTDKKMAHQALAYSLGNAKSDMALYLLSKFNFTKQDIAEMEKMNNNMYCELYDVEYLLSEDSANYKVLEYFIKGFNIKXXXLNIKSFDKIQSENIQTHKNTYSE | |||||||||||||||||||
1 | 5w1hA | 0.10 | 0.08 | 3.08 | 0.62 | SPARKS-K | ---------------KLTVNAKTAVVSENRSQEGILYNDPSRYG----------KSRKND-EDRDRYIESRLKSSGKLYR--IFNETDELQWFLSEIVKKINRRNGLVLSDMLSV---DDRAFEKAFEKYAELSYTNRRNKVSGSPA--------FETCVDAATAERLKGII-SETNFINRIKNNIDNVSEDIIDRIIAKYSLCRERVKRGLKKDPDIDVQRDFIDYVLEDFYH-----VRAKSQVSRSIKNMNMPQPEGDGKFAITVSKGG--- | |||||||||||||
2 | 4b4tT | 0.15 | 0.08 | 2.82 | 0.75 | FFAS-3D | ---------------------------------------------------------FDSFENYFNQLKPYYFSNNHKLS----ESDKKSKLISLYLLNLLSQNNTTKFHSELQYLDKHIKNLDSLLSYPIK-----------------------LDRWLMEGSYQKAWDLLQSGSQNISEFDSFTDILKSAIRDEIAK----------NTELSYDFL--PLSNIKALLFFNNE--KETEKFALNWPIVNSKV---------------------- | |||||||||||||
3 | 5h2cA | 0.14 | 0.08 | 2.72 | 0.44 | HHpred | -----------------------------------------------------------------------------------------KPLLKLKLLDALRQGSFPNLQDL--------------LKKQFQP-LD--------DPNVQQVLHLMLHYAVQVAPMAVIKEIVHHWSNGNTPLHIAAYQSRGDIVAFLLDQPTINDIEIAQMMQVKRSTYRDFGHLESILSSNKRDVIMCRWLLEHG-ADP-------FKRDRKGKLPIELVKIA- | |||||||||||||
4 | 2grmA | 0.09 | 0.08 | 3.01 | 0.92 | MUSTER | ----------------------------------VNFFEILNRAG-------MNTKSVNETGKEKLLISKIFTNPQRIEPKRLTSLQYFSIYLGYISIAHHYNIEVPTFNKTITSDTFFGIDYEIVSNLLNVLPYEEVSSIIKPPIVDSFGKDYDLTIQTVLKNALTISIMNRNLKEAQYYINQFEHLKTISINGCYDLEINYLKQIYQFLTDKNIDSYLNAVNIINIFKIIGSLVEELTKISAKEKFTPPKEVTMYYENYVAIENNPI-PEIKE | |||||||||||||
5 | 2pffA1 | 0.15 | 0.11 | 3.80 | 0.78 | HHsearch-2 | FKDKYVLITGAEVLQGLLQGG----------AKVVVTTSRFSKQVTDYY----QSI-YAKY------------GAKGSTLIVVPFNQGSKQDV-------------EALIEFIYDTEKNGWDLDAIIPFAAIPEQGIEL--------EHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPILPMSSESKLTLFNRWTPEVVELCQKSPV-------MADLNGGL-QFVPELKEFTAKLRKELVETSEIETALEHKVVNGN---------- | |||||||||||||
6 | 2grmA | 0.09 | 0.08 | 3.01 | 0.64 | Neff-PPAS | ----------------------------------VNFFEILNRAG-------MNTKSVNETGKEKLLISKIFTNPQRIEPKRLTSLQYFSIYLGYISIAHHYNIEVPTFNKTITSDTFFGIDYEIVSNLLNVLPYEEVSSIIKPPIVDSFGKDYDLTIQTVLKNALTISIMNRNLKEAQYYINQFEHLKTISINGCYDLEINYLKQIYQFLTDKNIDSYLNAVNIINIFKIIGSLVEELTKISAKEKFTPPKEVTMYYENYVAIENNPI-PEIKE | |||||||||||||
7 | 5h2cA2 | 0.10 | 0.04 | 1.47 | 0.52 | HHsearch | ---------------------------------------------------------------------------------------------------------------------------------------------------SKPLLKLKLLDALRQGSFPNLQDLLKKQFVLHLMLHYAVQVAPMAVIKEIVHHWDLNERDSNGNTP-----------LHIA--AYQSRGDIVAFLLDQPTIND----CV---LNNSHLQAIEMCKNL- | |||||||||||||
8 | 2dqmA | 0.15 | 0.15 | 4.89 | 0.65 | SP3 | DQAEKQPLPFAIELYDNEGKVIPLQKGGHPVNSVLNVTQAFDNVYFQPLLCEFSAPVKLEYKWSDQQLTFLM---RHARND--FSAQSLLATYIKLNVARHQQGQDPALAAEILTDIIDPIAIAEVREALTRDELLSEYRVEHEDIAKRTLRNACLRFLAF-GETHLADVLVTDALAALSAAVAAQLPCRDALMQEYDDKW---HQNGLVMDKWTSPAANVLETVRGLLQHRSFTRSLIGAFAGSFHAEDGSRNLKRYDRAALEQLKGLENL-SG | |||||||||||||
9 | 2qenA | 0.06 | 0.05 | 2.45 | 0.87 | PROSPECTOR2 | MLFDLRPKTRREDEESLENYPLTLLLLNERPGILIDCRELYAERGHITREELIKEL-QSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFR-ELNDLGEELGEFEAQYLRFYGSRGGKELLALFAYAYDSITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAEYLRNGDFGRAMKRTLEVA---KGLIMGELEELRRRSPRYVDILRAIALGYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEEDNRI | |||||||||||||
10 | 4mk6A1 | 0.18 | 0.05 | 1.54 | 0.48 | FFAS03 | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KISIADITNICGLNRQTFYYHFTDKYDLLTWTYENDFFHCLADGITLGNWDKHVLKLESIK-ENADFYKNTVS- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |