>PF05884 (296 residues) MPQDASDGYERLTDIAEAAKNEGSELKHVIRDVYRNYSELGSDIHDYYEKNLKKFPETVE QTANDLYSFSQTFREDANKFLESMMEMSPPEKISGFNISKLFANSIFLLVIASFSRFVGS YITAPVFGIIFLNVGAIILSVVVVPIIATYVYQNLKVRSLAEKRIACAGFIFLQSVLIGF INQNDWLESVPFSVLTQIISSFSYPLILAHTDNRQKILGIVAGSSMIFHLAHGFFFSGMD GAFLTIAILYTILAICLIQYSIAFRCQTDFDMMLLTMQYVFLVSVVRMFAVMSFGK |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | MPQDASDGYERLTDIAEAAKNEGSELKHVIRDVYRNYSELGSDIHDYYEKNLKKFPETVEQTANDLYSFSQTFREDANKFLESMMEMSPPEKISGFNISKLFANSIFLLVIASFSRFVGSYITAPVFGIIFLNVGAIILSVVVVPIIATYVYQNLKVRSLAEKRIACAGFIFLQSVLIGFINQNDWLESVPFSVLTQIISSFSYPLILAHTDNRQKILGIVAGSSMIFHLAHGFFFSGMDGAFLTIAILYTILAICLIQYSIAFRCQTDFDMMLLTMQYVFLVSVVRMFAVMSFGK | |||||||||||||||||||
1 | 4yayA | 0.10 | 0.09 | 3.48 | 1.32 | FFAS-3D | ---DLEDNWETLNDVIEKADN-AAQVKDALTKMRAAALDAQKDFRHGFDILVGQIDDALKLANKEAQAAAEQLKTTRNAYIQKILNSSDCPKAGRHNYIFVMI-PTLYSIIFVVGIFGNSLVVIVIYFFLLNLALADLCFLLTLPLWAVYTAMEYR-WPFGNYLCKIASASVSFNLYASVF------------LLTCLSIDRYLAIVHPMKSRLRRTMLVAKVTCIIIWLLAGLASLPIGLGLTKNILGFLFPFLIILTSYTLIWKALKKNDDIFKIIMAIVLFF--FFSWIPH-- | |||||||||||||
2 | 3rkoB | 0.07 | 0.06 | 2.57 | 1.16 | CNFpred | ----------FIASMVVLVLDNLLLMYLGWEGVGLCSYLLIGAAAMKAFVVTRVGDVFLAFALFILYNELTLNFREMVELAPAHFADGN---NMLMWATLMLLGGAVGKSAQLQTWLADAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMT---PEVLHLVGIVGAVTLLLAGFAALVQIKRVLAYSTMSQIGYMFLALGVQAWDA---AIFHLMTHAFFKALLFLASGSVILA-IPLVYLCFLVGGAALGFFSKDEILAGAMHINLMVAGLVGAFMTSLYTFRMIFIVFHGK | |||||||||||||
3 | 5cwpA | 0.07 | 0.05 | 2.22 | 1.04 | PROSPECTOR2 | MSSDE----EEARELIERAKEAAERAQEAAER------TGDPRVRELARELKRLAQEAAEEVKR-----------------------DPSSSDVNEALKLIVEAIEAAVRALEAAERTG------------DPEVRELARELVRLAVEAAEEVQRNPSSSDVNEALKLIVEAIE-------------------------AAVRALEAAERTGDPEVRELARELVRLAVEAAEEVQRNPSSEEVNEALKKIVKAIQEAVESLREAEESGDPEKREKARERVREAVERAEEVQRDPSE | |||||||||||||
4 | 5k7vA | 0.10 | 0.08 | 3.15 | 0.87 | SPARKS-K | ------IEEVVAEMIDILAESSKKSIEELARAAEKAVAEAIEEIARLATAAIQLIEALAEEFMARAISAIAELAKKAIEAIYRLAD----NHTTDTFMARAIAAIANLAVTAILAIAALAT------EEFMARAISAIAELAKKAIEAIYRLANHTTDKFMAAAIEAIALLATLAILAIALLASNHTT----------------------EEFMAKAISAIAELAKKAIEAIYRLADTYIEKAIEAIEKIARKAIKAIEMLAKNITTEEYKEKAKSAIDEIREKAKEAIKRLEDNR | |||||||||||||
5 | 6me6A | 0.08 | 0.08 | 3.03 | 1.28 | FFAS-3D | --ADLEDNWETLNDVIEKADN-AAQVKDALTKMRAAALDAQKDFRHGFDILVGQIDDALKLAVKEAQAAAEQLKTTRNAYIQKYLGDGARPSWVAPALSAVL---IVTTAVDVVGNLLVILSVLRLVSLAL---ANLVVAFYPYPLILVAIFYDGWAFGEEHCKASAFVMGLSVIGSVWNITA--------IAIDRYLYICHSMAYHRIYRRWHTPLHICLIWLTVVALYTAAVVVIHFLLPIAVVSFCYLRIWVLVLQKDQFEEVECLKPSDLRSFLTMFVVFVIFAICFAPL-- | |||||||||||||
6 | 6iu3A | 0.13 | 0.07 | 2.46 | 0.43 | HHpred | -------------VAAGAIKSEADNYARELKREQEEIIREAAEVAEILARYG-IEPHEYGPVVNAL----RKKPQAWLDFMKFELGLEKPDP--------KRALQSA--FTIAIAYVLGGLV--PLIPYMFIPVASVILTLMALLIFGYAKGYFTDNKFKSALQTALIGAASAAAFGMAKAVQSENLYFQ---------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 4ea3B | 0.08 | 0.08 | 3.09 | 0.77 | MUSTER | NWETLNDNLKVIEKAAAQVKDALTKMRAAALDAQKATPPKLEPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLPLGLKVTIVGLYLAVCVGGLLGNCLVMYVILRATNIYIFNALADTLVLLTLPFQGTDILLGFWPFGNALCKTVIAIDYYNMFTSTFTLTALDVRTSS-AIWALASVVGVPVAIMGSAEIWGPVFAICIFLFSFIVPVLVISVC-RITRLVLVVVAVFVGCWTPVQVFVLAQGLGVQPSSETAVAILRFCTALGYVILYAFLDE | |||||||||||||
8 | 4he8F | 0.08 | 0.07 | 2.92 | 1.11 | CNFpred | ----------MLTLVLADSYPVMFIGWEGVGLASFLLIGFYADSARKAFIVNRIGDLGFMLGMAILWALYTLSISELKEAMEGPL--------KNPDLLALAGLLLFLGAVGKSAWLPDAMAGPTPVSALIHAATMVTAGVYLIARSSFLYSVL---PDVSYAIAVVGLLTAAYGALSAFGQTDKIVAYSTISQLGYMFLAAGVGAYW----VALFHVFTHAFFKALLFLASGSVIH-TRWHALIGALALFWSKDAILAATLTYPFGGVGFYVGALLVAVLTAMYAMRWFVLVFLG | |||||||||||||
9 | 6dkmB | 0.19 | 0.04 | 1.42 | 0.34 | HHsearch-2 | ---DEDDELERLLREYHRVLREYEKLLEELRRLYEEYKRGSEESLREIKEILDKSERLWDLSEEVW-------RTLLYQA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ | |||||||||||||
10 | 4ea3B | 0.09 | 0.09 | 3.37 | 0.90 | Neff-PPAS | -KADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLPLGLKVTIVGLYLAVCVGGLLGNCLVMYVILRMKTATNIYIFNLALADTLVLLTLPFQGTDILLGFWPFGNALCKTVIAIDYYNMFTSTFTLTASKAQAVNVAIWALASVVGVPVAIMGSAEIGPVFAICIFLFSFIVPVLVISVCYSLMRLVLVVVAVFVGCWTPVQVFVLAQGLGVQAVAILRFCTALGYVNSCLNPILYAFLDE | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |