>PF05875 (286 residues) GYWSPVTSTLNWCEEDYYATIYSAEIVNTLTNLLFVWLAFRGINNCIQNGHDRIFLVTFF GYLVVGTGSFLFHSTLKYPMQLVDELSMIYTTCLMFYATFSHKQTGPIRVLLAVFLVALS IFITAYYHYLGDPVFHQNMYALLTAIVLFRSMYVMERDIRPKPREREAAPGQSLISDKEQ QRRDDRDRKILKTMWLMIACGLSIFLGGFGIWNLDNMYCSRLRKWRHEIGLPWGIFLEGH GWWHLMTGTGAYFYIVWGVWLRHCLNGRQEEYKLVWPSVFTSLPSV |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | GYWSPVTSTLNWCEEDYYATIYSAEIVNTLTNLLFVWLAFRGINNCIQNGHDRIFLVTFFGYLVVGTGSFLFHSTLKYPMQLVDELSMIYTTCLMFYATFSHKQTGPIRVLLAVFLVALSIFITAYYHYLGDPVFHQNMYALLTAIVLFRSMYVMERDIRPKPREREAAPGQSLISDKEQQRRDDRDRKILKTMWLMIACGLSIFLGGFGIWNLDNMYCSRLRKWRHEIGLPWGIFLEGHGWWHLMTGTGAYFYIVWGVWLRHCLNGRQEEYKLVWPSVFTSLPSV | |||||||||||||||||||
1 | 3wxvA | 0.14 | 0.12 | 3.94 | 1.16 | SPARKS-K | LLHGHRPPMPSFRACFKSIFRIHTETGNIWTHLLGFVLFLFLGILTMLLQEKVVFGMFFLGAVLCLSFSWLFHTVYCRTFSKLDYSGIALLIMGSFVPWLYYSFYCSPQPRLIYLSIVCVLGISAIIVAFATPKHRQTRAGVFLGLGLSGVVPTMHFTIAEGFVKATTVMGW-------------------------FFLMAVMYITGAGLYAAR---------------IPFDIWFQSHQIFHVLVVAAAFVHFYGVSNLQEFRYGLEGGCTDDT---------- | |||||||||||||
2 | 3wxvA | 0.14 | 0.12 | 3.92 | 1.33 | FFAS-3D | GSEGR-WRVIPYDDNDYLLHGHRPETGNIWTHLLGFVLFLFLGILTMLRMYFVVFGMFFLGAVLCLSFSWLFHTVVSRTFSKLDYSGIALLIMGSFWLYYSFYCSPQPRLIYLSIVCVLGISAIIVAQWDRFATPKHRQTRAGVFLGLGLSGVVPTMHFTIAEGFVKATTVMGWFF-----------------------LMAVMYITGAGLYAAR---------------IPERFFPQSHQIFHVLVVAAAFVFYGVSNLQEFRYGLEGG---------------- | |||||||||||||
3 | 3wxvA | 0.15 | 0.12 | 4.10 | 0.64 | HHpred | GHR-PPMPSFRACFKS--IFRIHTETGNIWTHLLGFVLFLFLGILTLRMPQEKVFGMFFLGAVLCLSFSWLFHTVVSRTFSKLDYSGIALLIMGSFWLYYSFYCSPQPRLIYLSIVCVLGI-SAIIVAQFATPQTRAGVFLGLGLSGVVPTMHFTIAE--GF------------------------V-KATTV-MGWFFLMAVMYITGAGLYAARIPERF----------FPFDIWFQSHQIFHVLVVAAAFVHFYGVSNLQEFRYGLEGG--------------- | |||||||||||||
4 | 3wxvA | 0.16 | 0.13 | 4.41 | 0.89 | MUSTER | GHRPPMPSF-----RACFKSIF--ETGNIWTHLLGFVLFLFLGILTMLRMYFMVFGMFFLGAVLCLSFSWLFHTVYCRTFSKLDYSGIALLIMGSFVPWLYYYCSPQPRLIYLSIVCVLGISAIIVAQWFATPKHRQTRAGVFLGLGLSGVVPTMHFTIAEG-------------------------FVKATTVMGWFFLMAVMYITGAGLYAARI--------ERFFPGK-FDIWFQSHQIFHVLVVAAAFVHFYGVSNLQEFRYGLEGG-----TDDT------ | |||||||||||||
5 | 3rkoB | 0.09 | 0.07 | 2.65 | 1.28 | CNFpred | ---------------------LMWATLMLLGGAVGKSAQLLQTWLADAMAGPTPVSALIHAATMVTAGVYLIARTHGLFPEVLHLVGIVGAVTLLLAGFAALVQDIKRVLAYSTMSQIGYMFLALGVQAWDAAIFHLMTHAFFKALLFLASGSVILACH-----------HEQNIFKMGGL------RKSIPLVYLCFLVGGAALSALTAGFFSKDEILAGAMANG---------HINLMVAGLVGAFMTSLYTFRMIFIVFHG---------------------- | |||||||||||||
6 | 3wxvA | 0.15 | 0.12 | 4.03 | 1.43 | HHsearch-2 | GHR-PPMPSFRACFKS--IFRIHTETGNIWTHLLGFVLFLFLGILTLRMPQEVVFGMFFLGAVLCLSFSWLFHTVYSRTFSKLDYSGIALLIMGSFWLYYSFYCSPQPRLIYLSIVCVLGIS-AIIVAQFPKHQTRAGVFLGLGLSGVVPTMHFTIAE--GF------------------------V-KATTV-MGWFFLMAVMYITGAGLYAARIP--E-------RF-FPFDIWFQSHQIFHVLVVAAAFVHFYGVSNLQEFRYGLEGG---------CTDDT- | |||||||||||||
7 | 6eznF1 | 0.08 | 0.08 | 3.07 | 1.14 | Neff-PPAS | RVTGGTLAFIWHALRNWLGLPIDIRNVCVLFAPLFSGVTAWATYEFTKEIKDASAGLLAAGFIAIVPGYISRSVAGSYDNEAIAITLLMVTFMFWIKAQKTGSIMHWGGYVFITNLIPLHVFLLILMGRYSSKLYSAYTTWYAIGTVASMQIPFVGFLPIFGLIQIVAFGDFVKGQISTAKFKVIMQPVSWPAFFFDTHFLIWLFPAGVFLLFLDL---KDEHVFVIAYSVLCSYFAGVMVRLMLTLTPVICVSAAVALSKIFDIYLDFKIKPAALLAKLIVSGSF | |||||||||||||
8 | 3wxvA | 0.15 | 0.12 | 4.02 | 1.52 | HHsearch | GHR-PPMPSFRACFKS--IFRIHTETGNIWTHLLGFVLFLFLGILTLRMPQEVVFGMFFLGAVLCLSFSWLFHTVYSRTFSKLDYSGIALLIMGSFWLYYSFYCSPQPRLIYLSIVCVLGI-SAIIVAQFPKHQTRAGVFLGLGLSGVVPTMHFTIAE--GF------------------------V-KATTV-MGWFFLMAVMYITGAGLYAARIP--E-------RF-FPGDIWFQSHQIFHVLVVAAAFVHFYGVSNLQEFRYGLEGG----------CTDD- | |||||||||||||
9 | 3wajA1 | 0.07 | 0.07 | 2.98 | 1.09 | PROSPECTOR2 | SVLFPHRIWFDPFTYYPYGATSGESLRAVFIPAIGGVLAILPVYLLTREVFDKRAAVIAAFLIAIVPGQFLQRSILGFNDHHIWEAFWQVSALGTFLLAYNRWKGHDLTGAGFIIAPIILAFMFFAFVLAGFVNADRKNLSLVAVVTFAVSALIYLPFAFNYPGFSTIFYSPFQLLVLLGSAVIAAAFYQIEKWNDVGFFEGRKGMPLAVIVLTALIMGLFFVLTNAVLHFGALFFFGMAGILYVYSALALSVVTYILADYDEYYLQLYPTPQSNKEPFSYPFETY | |||||||||||||
10 | 3wxvA | 0.14 | 0.10 | 3.36 | 0.36 | SAM | -----------LKDNDYLLHGHRPETGNIWTHLLGFVLFLFLGILTMLRMEKVVFGMFFLGAVLCLSFSWLFHTVYSRTFSKLDYSGIALLIMGSFVPWLYYSFSPQPRLIYLSIVCVLGISAIIVAQRFATRQTRAGVFLGLGLSGVVPTMHFTIAEGFV-------------------------ATTVM----GWFFLMAVMYITGAGLYAARIPERFFPG--------KFDIWFQSHQIFHVLVVAAAFV--------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |