>PF05476 (260 residues) RRFLSEATRNTLYLDCMNRKFDDVLRVVRSTSANEMDYAFLQLYLSRSCQWGHIASVTHI WDKYVLRLKMMTVHPSLLCEIGNLALNEGKHFLPPQIYHHYVKFFSGTMPIDEEQRIEYE LLRIKVESFAKGTMLKTRFREKWKVLLEDMDHHLSSAMEFRVRDFPYLTKSVQLEDNEML MKLLFDQNKLDIKNRSTAPLLLNIILSQPQQSIESKISLFEKFYDTHRSLKYDDTLTILF RLCKGDGYRLSKLGQMVEEK |
![]() | |
|
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | RRFLSEATRNTLYLDCMNRKFDDVLRVVRSTSANEMDYAFLQLYLSRSCQWGHIASVTHIWDKYVLRLKMMTVHPSLLCEIGNLALNEGKHFLPPQIYHHYVKFFSGTMPIDEEQRIEYELLRIKVESFAKGTMLKTRFREKWKVLLEDMDHHLSSAMEFRVRDFPYLTKSVQLEDNEMLMKLLFDQNKLDIKNRSTAPLLLNIILSQPQQSIESKISLFEKFYDTHRSLKYDDTLTILFRLCKGDGYRLSKLGQMVEEK | |||||||||||||||||||
1 | 4hnwA | 0.13 | 0.12 | 4.17 | 0.77 | SPARKS-K | IESASPICCHVLGIYMRNKEYKESIKWFTAALNNGSNKQIYRDLATLQSQIGDFKNALVSRKKYWEAFLG---YRANWTSLAVAQDVNGER---QQAINTLSQFEKEGKISDSEKYEHSECLMYKNDIMYKAASDNQDKLQNVLKHLNDIEPCVFDK----FGLLERKATIYMKLQLKDASIVYRTLIKRNPDNFKYYKLLEVSLGI--QGDNKLKKALYGKLEQFYPRC--EPPKFIPLTFLQDKEELSKKLREYVLPQ | |||||||||||||
2 | 4ynvA | 0.09 | 0.08 | 3.20 | 0.99 | FFAS-3D | ---INPKELLDRATTLLEEDIETAAKVARTAGENGRHAGAALTLLGQIVELGDIDAARNYYAAAVK------VDEDPEKFLWLAQLSEEG---GHDSVAWFERGPLSRGQVEAAIADKRRRLAETLCAVVTDLSWEDDAEQRCEALITEA--TIAPEWPETWQTVANVRISQERTEEEALRRSLGTHLPPEDPGVPPFPSRVSLVRLLIEVDEEEALEVTERLIAEDDLSV--EVWYLGGYA-------RYRLGEKEREA | |||||||||||||
3 | 2xevA | 0.16 | 0.07 | 2.31 | 0.27 | HHpred | -------AYNVAFDALKNGKYDDASQLFLSFLELYPNGPNALYWLGESYYTRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKN---TEAQQTLQQVATQYPGSDAARVAQERLQSIR--------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
4 | 4i1aA | 0.10 | 0.09 | 3.45 | 0.69 | MUSTER | ---LEYYFYFFKGMYEFRRELISAISAYRIAVEDEIEKAEFFFKVSYVYYYMKMNYANRALKIFREYEEYAVQTVRCQFIVAGNLIDSLE---YERALEQFLKSLEISKESNIEHLIAMSHMNIGICYDELK-----EYKKASQHLILALEIFEKSKHSFLTKTLFTLTYVEAKQQLIYFRKGRFIADKSDDKEYSAKFKILEGLFFSDG-ETQLIKNAFSYLASRKMFADVENFSIEVADYFHEQGRMSIEARRKIKKG | |||||||||||||
5 | 5ormA | 0.12 | 0.11 | 3.92 | 0.96 | CNFpred | GIVPDVVTYTTLISGLGKGRLEEALELFEEMKGIVPNVVTYTTLISGLGKAGRLEEALELFEEMKE--KGIVPDVVTYTTLISGLGKA---GRLEEALELFEEMKEKGI------VPDVVTYTTLISGLGKA-----GRLEEALELFEEMKE-----IVPDVVTYNTLISGLGKGRLEEALELFEEMKEKGIVDVVTYNTLISGLGKA---RLEEALELFEEMKEKGIVPDVVTYTTLISGLGKARLEEALELFEEMKEK | |||||||||||||
6 | 1vt4I3 | 0.14 | 0.07 | 2.50 | 0.81 | HHsearch-2 | -----------------------------------------------------------------------------------------EYALHRSIVDHYNKTFDSDDLIPYLDQYFYSHIGHHLKNIEHPE----RM----TLF------------RMVFLDFRFLEQKIRHDILNTLQQLKFYKPYICDN----DPKYERLVN-----------AILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEAHKQVQRG | |||||||||||||
7 | 2qfcA | 0.08 | 0.07 | 2.89 | 0.82 | Neff-PPAS | AVYPSMDILQGIAAK-LQIPIIHFYEVLIYSDIERK--KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI-DVYQNLYIENAIANIYAENG----YLKKGIDLFEQILKQLLHDNEEFDVKVRYNHAKALYLDSLYQVNKAIEISCRINSMALIQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKEALVNKISRL-------------- | |||||||||||||
8 | 2chvA2 | 0.08 | 0.01 | 0.45 | 0.35 | HHsearch | TATARPEEMTELIQTALKGNFMEARELLDRLMVEY----------------GM--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 4wslA | 0.13 | 0.12 | 4.24 | 0.91 | SP3 | KGIPSVVTYNTLISGLGKGRLEEALELFEEMKEKVPSVVTYNTLISGLGKAGRLEEALELFEEMKEKG--IVPSVVTYNTLISGLGKAGRL---EEALELFEEMKEKGIVPS------VVTYNTLISGLGKAGRL-----EEALELFEEMKEK---GIVPSVVTYNTLISGLGKAGRLEEALELFEEKEKGIVSVVTYNTLISGLG--KAGRLEEALELFEEMKEKGIVPS-VVTYNTLISGLGGRLEEALELFEEMKEK | |||||||||||||
10 | 2bkuB2 | 0.07 | 0.07 | 2.85 | 0.84 | PROSPECTOR2 | TNQLTLEDAQSLQELQADMLMGLFFRLLEKKDSAFIEDDVFYAALAASLGKGFEKYLETFSPYLLLNQVDSPVSITAVGFIADISNSLEEDFRRDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA------DFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSVGLIGDIAAMFPDGSIQDWVIDYIKRTRSGQLFSQATKDTQLSL | |||||||||||||
|
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |