>PF05466 (244 residues) GGKLSKKKKGYNVNDEKAKDKDKKAEGAATEEEETPKQNEDAQQTTETAEVKENNKEEKG DKESQVAANKTEDKEGEKEKAVSQEEVQKSEPEKPEAVVDAKVEPQKNNEQLAPKQEEQT SASAPAASSEAPKTSEPSNDAKVSQPSEATATSKADDKSKEEGEAKKTEAPAAPAAQETK SDVAPASDSKPSSSEAAPSSKETPAATEAPSSTPKASAPAAPPEEAKSSEVPATNSDQTI AVQD |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | GGKLSKKKKGYNVNDEKAKDKDKKAEGAATEEEETPKQNEDAQQTTETAEVKENNKEEKGDKESQVAANKTEDKEGEKEKAVSQEEVQKSEPEKPEAVVDAKVEPQKNNEQLAPKQEEQTSASAPAASSEAPKTSEPSNDAKVSQPSEATATSKADDKSKEEGEAKKTEAPAAPAAQETKSDVAPASDSKPSSSEAAPSSKETPAATEAPSSTPKASAPAAPPEEAKSSEVPATNSDQTIAVQD | |||||||||||||||||||
1 | 4k0mC | 0.18 | 0.14 | 4.65 | 2.01 | SPARKS-K | ----------KVYTIDEAARTAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAI-------------------------AKGEKIKEAEEAGADYVGGEEIIQAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------AAAAAAAAAAAAAAAAAAAAAAAAA-AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------ | |||||||||||||
2 | 5gaoE | 0.17 | 0.17 | 5.54 | 1.51 | MUSTER | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||||||
3 | 5gaoE | 0.17 | 0.17 | 5.54 | 2.98 | Neff-PPAS | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAARAAAAAAAAAAAAAAAAAAAAA | |||||||||||||
4 | 5gaoE | 0.17 | 0.17 | 5.54 | 1.64 | PROSPECTOR2 | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAARAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTKETKSNKK | |||||||||||||
5 | 6em5m | 0.12 | 0.12 | 4.31 | 1.74 | SPARKS-K | GKRIMRPAKGDSIELPELLDKNSSSLNLTKEEQRNEQTDDSINPYEPLIDWFTRHEEVMPTAVPEPKRRFVPSKNEAKRVMKIVRAIREGRIIPPKKLKEMKEKEKIENYQYDLWGDSTETNDHVMH---LRAPKLPPPTNEESNPPEEYLLSPEEKEAWENTEYSERERNFIPQKYSALRKVPGYGESLYLAPRVRKNKLNIDPNSLIPELPSPKDLRPFPIRIYAGHKGKTGSDDGTVRVWE | |||||||||||||
6 | 5x6oG | 0.13 | 0.10 | 3.39 | 0.44 | FFAS-3D | -----------TVGEFSSDDDD--------DIGTRP----PRFTQIPPSSAATQIPTTLEVTTTTLNNKQSKNDNQVNQLNKAQGEA---------SMLRDNIEREKEKNIQAVKVNELVKHLQ-----------------------ELAKLKQELQKLEDEKKFLQRGKSKREVITNVKPPSTTLNTITPDS-----SSVAIEAKPQSPQSKKRKISDNLLKKNMVPLNPNRIIPDET----- | |||||||||||||
7 | 2zlzA | 0.28 | 0.02 | 0.63 | 0.33 | HHpred | GAKLSKQNHAPALPKGDP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
8 | 6etxG | 0.08 | 0.08 | 3.10 | 1.44 | MUSTER | RVFNHSRDRWLRVLSPFAPDYIQRSLFHRKGINEESCFSFLRFIDISPAEMANLMLQGLLARWLALFLSLKASYRLHQLRSWGAPEGYLRNKDFLLGVNFPLSFPNLCSCPLLKSLVFSSHCKAVSGYSDQVVHQRRSATSSLRRCLLTELPSFLCVASPRVTAVPLDSYCNDRSAEYERRVLKEGGSLAAKQCLLNGAPELAADWLNRRSQFFPEPAGGLWSIRPQNGWSFIRIPGKESLITD | |||||||||||||
9 | 1xq8A | 0.18 | 0.06 | 1.86 | 0.56 | CNFpred | -----------------TNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDPDNEAYEMPSEEGYQDYEPEA------------------------------------------------------------------------------------------------------------------------------------------------------ | |||||||||||||
10 | 3tb8A1 | 0.25 | 0.07 | 2.03 | 0.34 | HHsearch-2 | GGKWSKSSIGWPAVRERMRRAEPAADGVGAASRDLEKH----GAITSSNTAANN-----AA------CAWLEAQEEE--------KV------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |