>PF05342 (250 residues) KLKYYQGYTLSTTMVYDRGEGEETEKLEDKQIQLDLKKVEIKNIKETSLMNVDAEGNETD KSLLSEKPTDVSQLYLRVTTHDNKVTRLAVSSVEEVVVDGKTLYKVVAKAPDLVQRRADD TLSEEYVHYFEKQLPKVNNVYYNFNELVKDMQANPTGEFKLGADLNAANVKPNGKSYVTK PFKGKLLSNDGGRFTIHNIERPLFANIEGGKIHDINLANVNINMPWADKVAPIANVIKNN ATIENVKVTG |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | KLKYYQGYTLSTTMVYDRGEGEETEKLEDKQIQLDLKKVEIKNIKETSLMNVDAEGNETDKSLLSEKPTDVSQLYLRVTTHDNKVTRLAVSSVEEVVVDGKTLYKVVAKAPDLVQRRADDTLSEEYVHYFEKQLPKVNNVYYNFNELVKDMQANPTGEFKLGADLNAANVKPNGKSYVTKPFKGKLLSNDGGRFTIHNIERPLFANIEGGKIHDINLANVNINMPWADKVAPIANVIKNNATIENVKVTG | |||||||||||||||||||
1 | 3n6zA | 0.21 | 0.10 | 3.06 | 1.60 | HHpred | --------------------------------------------------------------------------------------------------------------------------------LFEKGNGTDSKPYINATQIR-NRSVSGKVYFQLGADIDAGIDDWQSLNGSDFPYEIDF---DGDSHVIKNFKPSFFGVL-CGDCRNVGFVNASVSSARIGIITGYLGLKKT-GRIVNCYTTG | |||||||||||||
2 | 3n6zA | 0.15 | 0.07 | 2.28 | 1.56 | CNFpred | -------------------------------------------------------------------------------------------------------------------------------YMIMNA--------TQIRNMRSVLKSGMKVYFQLGADIDMAGIDDWQSLNGSFPYEIDFDG---DSHVIKNFKCSFFGVL-CGDCRNVGFVNASVSSA-RQGIGIITGYLGKTGRIVNCYTTG | |||||||||||||
3 | 3ljyA | 0.07 | 0.05 | 2.12 | 1.45 | CNFpred | --------------------TSKKISVADNEIKVDVIDFNYEQ-STVEVTVDQNLHPYVNIEVK--------DRVLTIAFK-KFIVKTNSKWLAAAKVS--GNANFMVNS-----------PLTGDETVIKANA---------------------NSLVQLKETVTVGKLDL----NVSGSANMVVNHLEADKIECDID-GSGSITIKKGNAKEGDYSIGDIHAF-GLAVPQLSCKVTGNGLAEVHATDN | |||||||||||||
4 | 3n6zA | 0.17 | 0.09 | 2.89 | 2.33 | HHsearch-2 | -----------------------------------------------------------------------------------------------------------DSYTRVPGDGAGGLFEK-------GN-GTDSKPYINATQI-RNRSVSGKVYFQLGADIDAGIDDWQSLNGGDFPYEIDF---DGDSHVIKNFKPSFFGVLC-GDCRNVGFVNASVSSARIGIITGYLGLKKT-GRIVNCYTTG | |||||||||||||
5 | 1rmgA | 0.09 | 0.07 | 2.56 | 1.31 | CNFpred | ------HFSVHDIILVDA-----------------AFHFTMDTCSDGEVYNM-------AIRGGNE---GLDGIDVWGSNIWVHDVEVTNCVTVKSPANNILVESIYCNWGCAMGSLGADTDVTDIVYRNVYTW-----------------------SSNQMYMIKSNG------------GSGTVSNVLLENFIGHGNAYSLDID-DGVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLED | |||||||||||||
6 | 3n6zA | 0.16 | 0.08 | 2.78 | 3.40 | HHsearch | -----------------------------------------------------------------------------------------------------------DSYTRVPGDGAGGLFEK-------GNGT-DSKPYINATQI-RNRSVSGKVYFQLGADIDAGIDDWQSLNSGDFPYEIDF---DGDSHVIKNFKPSFFGVLC-GDCRNVGFVNASVSSARIGIITGYLGLKKT-GRIVNCYTT- | |||||||||||||
7 | 4rm6A | 0.14 | 0.12 | 3.96 | 1.26 | HHsearch | AHDVPKGKDVNISGRIHIDS----FRGDSLLKLTNQGHIKINHADIH----S--TGRLFFITSLQNEKDSQSD--ITITDSKNGAMGVHMRNVVDVVAGGF----KKVNLDNIVA-------TGKTNFYIDVSRNNSRYEYGVLDKRLSELDQ-RRRRWKYYNDLDLDM---------NKAYWHRF---DM-RSTIKDTEILKNGFVH-LLAEKIKLDNSKIDITQINRLGMNGKVS---MVNSHIKIV- | |||||||||||||
8 | 5ny0A1 | 0.12 | 0.05 | 1.83 | 1.26 | HHsearch | ------------------------------------------------------------------------------------------------------------------------------------EDIQADATAANASELKKALQDTSVHTIKLTDNITLTSAIE----LTNVSRDVTI---YGNGKYINDGNGGIIHN-TKSYTVNLTIEKATLYNQ--SQYGFVHMNTDN-ITYKNITAY- | |||||||||||||
9 | 4ij2E | 0.11 | 0.10 | 3.74 | 0.77 | SPARKS-K | EHTADNWRPIDFQMKN--DKGERQFYHYVEPATVIFTELGLKTASTWKKFEVYEGDKKLPVELVSYDSDK-DYAYIRFPVSNGTREVKIVSSIEYGENIHEDYDYTLMVFAQPI---TNETYNLQKLLAPYHKAKTLERQVYELEKLQDQVKSALTDLQEAH--FVVFESEENSESFVEHP--FYTATLNGQKYVVMKTK-------DDSYWKDLIVERVTTVSKDPNNSRTLIFPYIPDKAVYNAIVKV | |||||||||||||
10 | 4ij2E | 0.12 | 0.12 | 4.06 | 0.60 | FFAS-3D | -------RPIDFQMKNDKGERQFYYASTVEPATVIFTELGLKTASTWKKFEVYEGDKKLPVELVSYDSDK-DYAYIRFPVSNGTREVKIVSSIEYGENIHEDYDYTLMVFAQPITNETKAKTLERQVYELEKLQEKLPEKYKTRVELADQVKSALTDLQEA--HFVVFESEENSESVMDGFVEFYTATLNGQKYVVMKTK-------DDSYWKDLIVEGKRVSKDPKNNSRTLIFPYIPDKAVYNAIVK- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |