>PF05314 (283 residues) RTDERRVENYRTVTEIVDADNSYKKEFDVSDLVYQNEAYLRKINRRELYLMVAKYYVEVV RELNLPDMRVLFGNRSMLEKVYSFVYYSLAFVNNQMVPHSVKFVDMKFVDVRDRSMSIPT DPIVFYKSLHSDDSTITCFIDSANILRILEKPVDVEAKFEMDDGKSQVFKMLDKIKNVEK KQSLATQRIIMYPFMETMEATPKMNEAYVTQFVTLLTIFSNAYLGLFKLMRSDFQQYFHY LLNHESLVREQSLPNVNNLIIGHFSFNVEAGASGKKGSGGLVF |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | RTDERRVENYRTVTEIVDADNSYKKEFDVSDLVYQNEAYLRKINRRELYLMVAKYYVEVVRELNLPDMRVLFGNRSMLEKVYSFVYYSLAFVNNQMVPHSVKFVDMKFVDVRDRSMSIPTDPIVFYKSLHSDDSTITCFIDSANILRILEKPVDVEAKFEMDDGKSQVFKMLDKIKNVEKKQSLATQRIIMYPFMETMEATPKMNEAYVTQFVTLLTIFSNAYLGLFKLMRSDFQQYFHYLLNHESLVREQSLPNVNNLIIGHFSFNVEAGASGKKGSGGLVF | |||||||||||||||||||
1 | 4bj1A | 0.14 | 0.12 | 3.98 | 0.68 | SPARKS-K | ---HVFYQKFKSMALQELGTNYLSISYSLSKFLSKNLRSMKNCEHIHQYAGIDRAVSETLSLVDINEMNDYLMKTS---DLMMMVMRKIN--------NDESIDHIVYFKFEQLDKIEPTEFIVLSVLEKSNNIAFKVLIYSNSLSTSLKKKLNTYTVFEMPILTC--AQEQEYLKKMIKFTFDSGSKLLQNSLVTCQLNNKESNLAIFFEFLKVFTYLFNAYTEIIVQSRT-FDELLDKIRNR--LTIKNYPH----------------------------- | |||||||||||||
2 | 4f41A2 | 0.10 | 0.07 | 2.61 | 0.59 | FFAS-3D | ---------------------------DAAMYDEARRVKMEKIANKHGALITFENYRQVLKI-----CEDCLKSSDPLMIGIGLIGMTFTQAEFSPAPYGKGVSKWSILFNGQAKTK------QGEGTKFGITYEIPVLTRSETVLAAYKR-----------LRESGQGKLWHGMSIDDFSSE---------------------TRLLLRDTVFNLFELRHLYAEVAYHNHVTKNSYFAAILGHN---NNDLETS-----LSYMTYTLPEDRDNALAR----- | |||||||||||||
3 | 3gobA | 0.12 | 0.06 | 2.23 | 0.33 | HHpred | -----------------------------------------------------------------------------------------------------------YVAALPLGRTILDTPLALYRQ---PDGVVAALLDIAPLSGHLQCPYH-GLEFDGGQCV-HNPHGNGARP---ASLNVRSFPVVERDAWGDAGAIPDFGCRVDP---------AYRTVGGYGHVDCNYKLLVDNLMDHAQYVHRANAQTDAF-DRLEREVIVGDG------------ | |||||||||||||
4 | 6djyD2 | 0.11 | 0.10 | 3.47 | 0.56 | MUSTER | RAVKD----FSAIEYLPDAIENIPTLTMLSRYISPSEAQNFFNNQPPYLNSIMNVNRQVFEAVK-RGNIQV--STGSMEHLCLCMHVKSGLIIDDKVVLRRNFNAVKAFLYGEGSLINPGLRMVFFGVETE----------AIDILKLFYGDKSLYIQGFGDRGIGRD-----------KFRTKIEDALTLRIGCDDQADYEDPNEEKFDDITDFVCYVTELVI-GLVKISMPTYYIMNKISSTLNNKFSNVAINIVKLSTQK-PYTYE-LSHGSTLTNKGYL | |||||||||||||
5 | 3os8A | 0.11 | 0.06 | 2.17 | 0.68 | CNFpred | ---------------------------------ASMMGLLTNLADRELVHM-INWAKRVPVDLTRHDQVHLL-----ECAWLEILMIGLVWRSME--------HPGKLLFAP---------NLLLDRN------QGKMVEGMVEIFDMLL----------------ATSSRFRMMNLQ----------------------------GEEFVCLKSIILLNSGVKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLI--------------------- | |||||||||||||
6 | 2pffB | 0.16 | 0.15 | 4.96 | 1.31 | HHsearch-2 | KILPEPTEGFAADDEPTTPAELVGKFLKVGQFDQVLNLCLTEFENCYLEALAAKLLQENDTTLVKTKIKNYITARIMAKRPFDKKSNSALFRAVG---EG-NAQLV-A-IFGGQGNTDDGDLIKFSAEIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYETDS--WESFFVSVRKAITVYPNTSLPPSILEGVPSPMLSISNLTQEQVQDYVN----KTNSHLPAKNLVVSGPPQSL-YGLNLTLRKAAPSGLDQSRIPFRKLKFSNRFLPVASPFHSHLLV | |||||||||||||
7 | 4hteA | 0.10 | 0.10 | 3.56 | 0.74 | Neff-PPAS | YKENERLYDLKQKTSLITDDEDRLNKIEDIEDRQKKLESINEVFEKQAGIFFDKNYPDQSLNYSDDEKIFITRANNELEDIVKEKRIKEAQISLNTVLGNRDISLAASNFFADKLSNILEKNNLSFDDVLENKHKIDYYTNKLEVFRNAENILEDYYDVQIKEDDEDYKAFNEVTDIKEKQQLIDFKTTENTIELETGNFIPKYSDEDRKYITEQVKLLQEKE----FKPNKNQHDKFVFGAIQKKLLSEYDFDYSDNNDLKHLYQESNEVGDEISKDNIEEF | |||||||||||||
8 | 1vt4I3 | 0.13 | 0.10 | 3.43 | 0.67 | HHsearch | ---EYAL--HR----SIVDHYNIPKTFDSDDLIPHHLKNIEHPERMTLFRMVFLDFRFL--------EQKIRHDSTAWNASGSI-LNTLQQLKFY-KPYIDNDPKYERL-VN---AILDF----LPKI-----EENLICSKYTDLLRIALMAEDEAIF----------EEAHKQV------QRGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGGGGGGG-GGGGGGGGGGG-GGGGGGGGGGGGGGGGG-GGGG-------G--GG-GGGGGG- | |||||||||||||
9 | 6etxG | 0.08 | 0.08 | 3.29 | 0.56 | SP3 | FERQETWSPFHISLKPYHISKFIYRHGQIRVFNHSRDRWLRVLSPFAPDYIQRSLFHRKGINEESCFSFLRFIDISPAEMANLMLQGLLARWLALFLSLKASYRLHQLRSGAPEGESHQRYLRNKDFLLGVNFPLSFPNLCSCPLLKSLVFSSHCKAVSGYSDQVVHQRRSATSSLRRCLLTELPSFLCVASPRVTAVPLDSYCNDRSAEYERRVLKEGGSLAAKQCLLNGAPELAADWLNRRSQFFPEPAGGLWSIRPQNGWSFIRIPGKESLITDSGKLYA | |||||||||||||
10 | 5hamA | 0.09 | 0.08 | 2.92 | 0.84 | PROSPECTOR2 | DYAQLDEKKFSVQPAITFRNTALTEEMKILAEVQETIKIANLIPDKEERALMLGDAKKREEILKLSDAEREKLKNDLLRGGEAQQQINEDILNRATKDIKDNGKEAAVIPIE-----MGYGHWTV----------LVAKYD--------KKDNQIILTFNDSLGNSINYDGQKLPKLIDKTLGNLPNKPIIIDEQTKQQTD-----QSACGVFTVDNGIKIAILSTEESKGEKGLRLREHHAQ---ILTDAMFKQDAQWIRQQ-------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |