>PF05226 (288 residues) LLVGWLALTPTADRADNLFYDGLIRVQDGPADPSIVIIAIDDRSLNALGRWPWPRTVHAA LVDRLNQAQPRAVAYDVLFTEPEAGDPALAAALARARDVHLPLLVEAPGQNGAAWQVSEP ASDLARAAASLGHVNMIVDGDGVIRRVPLYMQAGARSWPQLVLPLAETAGAAPPAPRPDA DSGEALIAAAPEAIAYRGPPGRFRTLSFVDVLNGEVPADFLKDRLVLVGATAPGMGDRYA TPAAPHGELSPGVEIQAALLQTLLEGGGPRTLSPPWVLGLSLLPLALL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | LLVGWLALTPTADRADNLFYDGLIRVQDGPADPSIVIIAIDDRSLNALGRWPWPRTVHAALVDRLNQAQPRAVAYDVLFTEPEAGDPALAAALARARDVHLPLLVEAPGQNGAAWQVSEPASDLARAAASLGHVNMIVDGDGVIRRVPLYMQAGARSWPQLVLPLAETAGAAPPAPRPDADSGEALIAAAPEAIAYRGPPGRFRTLSFVDVLNGEVPADFLKDRLVLVGATAPGMGDRYATPAAPHGELSPGVEIQAALLQTLLEGGGPRTLSPPWVLGLSLLPLALL | |||||||||||||||||||
1 | 4k9qA | 0.11 | 0.10 | 3.64 | 0.62 | SPARKS-K | PWVKWSYEPARPEDVPGAFMRAYATAMQQPQG--PVFLSLPLDDWEPEVDVAPDPDKVKEFAQRITASKNPLLIYGIARS---QAWSDGIAFAERLNAPVWARTPFPEDHPLFQGALTSGIGSLEKQIQVIGAPVFRIAGQFIPSTLLQVSAVVGDSLVSDSKLFLIEALKLIDQRTPQRSPMTKEDRTA----------MPLRPHAVLEVLKENSP----KEIVLVEECRINQPDTFYTFASGGL-----GWDLPAAVGLALGEEVSGRNRPVVTLMGDGSFQYSVQ | |||||||||||||
2 | 6apeA | 0.14 | 0.11 | 3.92 | 0.59 | FFAS-3D | --VVLLDGQALAYSIEKDLKNKIQIITVQHKRPKLAVILVGKKACERVGQENVTEAELLSLIKDYNTDNISGVLVQLPLPRHIDSKMVLEAIDPSKDVDGFHPLNIGKLCTQKESFLPATPMGVMRLLKHYHI-----EIKGK----DVAIIGASNIIGKPLSMLMLNAGASVSVCHILTKDISFYTQNADIVCVGVGKPDLIK-------------ASMLKKGAVVVDIGINHLNDGFITPVPKG----VGPMTIVSLLENTLI----------------------- | |||||||||||||
3 | 1oltA | 0.12 | 0.09 | 3.32 | 0.31 | HHpred | --LHWGGGTPYKAQISRLMKLLRENFQPREGFNRMGVQDFNKEVQRLVNR-EQDEEFIFALLNHAREIGFTSTNIDLIYGLPKQTPESFAFTLKELNRLSVFN-YAHLPTIFAAKDADLPSPQQKAFLTQSGYQFIGMD---------HFAR------PDDELAVAQREGVNGDTDLGMGVSAISM-IGDCYAQNQKELKQCNFRLDYSPIEQQDLLAPLADGLVDV-D-----EKGIQVTAKGR----LLIRNIC-------------------------------- | |||||||||||||
4 | 2vr2A | 0.10 | 0.09 | 3.37 | 0.64 | MUSTER | IIDFAIPQKG--GSLIEAFETWRSWADPKVCCDYSLHVAVT----------WWSDQVKEEMKILVQDKGVNSFKMFMLYMVTDLELYEAFSRCKEIGAIAQVHAENGDLIAEGAKKMITGPEGHELCRPEAVEAEATLRAITIAVNCPLYIVHVMSKSAAKVIADARRDGKVPIAASLGTDGTHYWNKEWHHAAHHVMGPPLRPDPSTPDFLM----NLLANDDLTTTGTDNCTFNTCQKADFTKIPNGVNGVEDRMSVIWEKGVHS---KMDENRFVAVTTNAAKIF | |||||||||||||
5 | 4jb0A | 0.08 | 0.06 | 2.43 | 0.93 | CNFpred | KADVIMGSS--VTPPTVAVSNVANEA-------QVPHIALAPLPIT-SVAMPQPIPIMGVLYEHMKKNNIKTVGYIGYSDS---YGDLWFNDLKKQGLKIVAEERFAR-------PDTSVAGQVLKLVAA------------NPDAILVGAS------GTAAALPQTSLRER----------------KGLIYQTH--------GAASMDFIRIA--GKSAEGVLMASGPVMD---------PEGQDDSALTKKPGLELNTAYEAKYGPNSRSQFAAHSFDAFKVLER | |||||||||||||
6 | 1jflA1 | 0.16 | 0.05 | 1.73 | 0.55 | HHsearch-2 | KTIGILGGMGPLATAE--LFRRIVIKTPDQEHPKVIIFNNPDRTAYILGKGEDPRPQLIWTAKRLEECGADFIIMPCNTAH------AFVEDIRKAKPII-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 4iilA | 0.09 | 0.08 | 3.19 | 0.68 | Neff-PPAS | FVPGFRHDSPVYAMLCDGVERAVTQERATGRSIGLDIIEAGPN----------QALWREKLAHLAAEQRYRLIVSS-----NPALPHVLEPILRQFPLQRFLVLDAYAPQEHSLITFRYNQWEQAYLAGHLSALVSASAMRFANKKIGLIAGQSYPVMTIPAFLAGARAVDPAFEVDVRVVGNWYDAAKSADLARILFHEGVDVMMPICGGANQGVLAAARELGFYVSWFDDNGYARAPGYVVG--SSVMEQERLAYEQTLRCIRGELPSAGAWTLGVKDGYVRFIEE | |||||||||||||
8 | 1jflA1 | 0.16 | 0.05 | 1.73 | 0.46 | HHsearch | KTIGILGGMGPLATAE--LFRRIVIKTPDQEHPKVIIFNNPDRTAYILGKGEDPRPQLIWTAKRLEECGADFIIMPCNTAH------AFVEDIRKAIKIII------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 3vtaA | 0.13 | 0.10 | 3.64 | 0.78 | SP3 | GLVSQANLYGLGLG----------TARGGVPLARIAAYKV-------CWNDGCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSINTFDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNLLKGKIVVCEASFGPHE-----FFKSLDGAA--------GVLMTSNTRD---------YADSYPLPSSVLDPNDLLATLR--YIYSIRSPG--------ATIF | |||||||||||||
10 | 5b69A | 0.09 | 0.07 | 2.75 | 0.89 | PROSPECTOR2 | -------MMTVLEDMLRKTRN-----------GKVHMTLIDPGA--------KPPQECARIAEEAEMAGTDFIMVGGSTDIDSRAMDEAISAIKAKTDLKVIIFPGSSLMISPKADLNSGSLEYVVGHQVKAAIPLSAMKIEKIPMAYLVFDPG---------MTVGRVGKAHLIPRDDEKTALSYFGFRLVYFEAGSGSPYHVGENVVRRV-----KQELDIPVIVGG----GIRT-------------------PEAAKALAQGTIAERSVNVYEALHPIVESIKE | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |