>PF05144 (284 residues) MYDFLGLRIHFRDDFYTHQSVGDEVHSSVDIVELARRGLRLSAGSVDVSEDGEVSLNDLH HPWDSIPSSYTGIAFKFYQASGFRNLACVEIKASPAKVMQGHNVYGSDRLHTCATYLLES LKRAMPEFCEVLDFNMIDVFRFDSTYSVQLNSRDTLMAALKGLSRVSHKYLRPSRHGQFE STLYFNDAPPEKGKPKTSGRTTSLCIYSKLDEVQFQLDDLKRKAKKERTERYNRVIEELS SHRLKNFANNRLRFEARFKTRWFIKHNIPQNLWDFIAFAEAYEL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | MYDFLGLRIHFRDDFYTHQSVGDEVHSSVDIVELARRGLRLSAGSVDVSEDGEVSLNDLHHPWDSIPSSYTGIAFKFYQASGFRNLACVEIKASPAKVMQGHNVYGSDRLHTCATYLLESLKRAMPEFCEVLDFNMIDVFRFDSTYSVQLNSRDTLMAALKGLSRVSHKYLRPSRHGQFESTLYFNDAPPEKGKPKTSGRTTSLCIYSKLDEVQFQLDDLKRKAKKERTERYNRVIEELSSHRLKNFANNRLRFEARFKTRWFIKHNIPQNLWDFIAFAEAYEL | |||||||||||||||||||
1 | 4cijA | 0.13 | 0.10 | 3.57 | 1.02 | FFAS-3D | MVDWLQVTFK---------TGQDSVKKCVEKLEKVFEILGLNEAEFLPLKNG-------KYGYKQGVAFQGNPVLAVYYDGADDMGIHVEMTGQGCRLF---ELHTSINWYELFYRLVY--------------EYEVNITRLDVAVDD-FKGYFKINTLVKKLKDDEVTSRFKKGGETIGHTLYFGAPSSD----------IQVRFYEKNVQMDDRAHVVAQIIADDVLPLGEI---------VAGLLRNYIQFRTRKTDKNKKRWPLARFWLNFLGDVQPLRI | |||||||||||||
2 | 4cwcA | 0.10 | 0.07 | 2.50 | 1.85 | HHsearch-2 | SFDAMTIVGNLNKTNAK------------KLSDFMST--EPQ-IR-LWDILQTKFKAK---------ALQEKVYIEYDKVKADWDRRNMRVEFNPNKLTH-------EEM----LWLKQNI---I------DYMEDDGFTRLDLAFDFEDDL----SDYYAMTDKAVKTIFYGR-N-GKPETKYFGV----------RDSDRFIRIYNKKQERKDN-----AD-----------VE---------VMSEHLWRVEIELKRDMVDYWNDSEKVKDIYMLIHEEST | |||||||||||||
3 | 4cwcA | 0.10 | 0.07 | 2.59 | 2.27 | HHsearch | SFDAMTIVGNLNKTNAK------------KLSDFMST--EPQ-IRL-WDILQTKFK----------AALQEKVYIEYDKVKADWDRRNMRVEFNPNKLTH-------EEM----LWLKQNII---------DYMEDDGFTRLDLAFDFEDDL----SDYYAMTDKAVKTIFYGR-N-GKPETKYFGV----------RDSDRFIRIYNKKQERKDN-----AD-----------VE---------VMSEHLWRVEIELKRDMVDYWNDCFNVKDIYMLIHEES- | |||||||||||||
4 | 4cwcA | 0.10 | 0.08 | 2.96 | 1.00 | SP3 | SFDAMTIVGNLNKTNAKK------------LSDFMST-------------EPQIRLWDILQTKFKAKALQEKVYIEYDKVKADSDRRNMRVEFNPNKLT-----------HEEMLWLKQNI-------IDYME--DDGFTRLDLAFDFEDDLSD-----YYAMTDKAVKKTIFYGRNGKPETKYFGVRDSD----------RFIRIYNKKQERKDNADMVDYWSSLEKVKDQAMIYMLIHEESTWGKLERRTK--NKY-REMLKSIS-EIDLTDLMKLTLKENE | |||||||||||||
5 | 4cijA | 0.12 | 0.11 | 3.83 | 1.03 | FFAS03 | CVDWLQVTFK---------TGQDSVKKCVEKLEKVFEILGLNEAEFLPLKNG-------KYGYKQGVAFQGNPVLAVYYDGADDMGIHVEMTGQGCRLFELHTSINWYEL-----------------FYRLVYEYEVNITRLDVAVD-DFKGYFKINTLVKKLKDDEVTSRFKKARHIENIVIEGGETIGHTLYFGAPSSDIQVRFYEKNVQMGMDIDVWNRTEIQLRDDRAHVVAQIIADLPLGEIVAGLLRNYIQFTDKNKKRWPLARFWLNFLGDVQPLRI | |||||||||||||
6 | 4cijA | 0.13 | 0.10 | 3.30 | 1.57 | HHsearch-2 | CVDWLQVTFKTGQDSVKK-C--VE--KLEKVFE--ILGLNEA--EFLPLKNGK---YGYKQGVA-FQGN-PVLAVYYDGA----DDMGIHVEMTGCRLFE--LHT-SINWYEL-------FYR-------LVYEYEVNITRLDVAVDDFKGYF-KINTLVKKLKDDEVTSFKKAHIETIGHTLYFGAP---------SS-DIQVRFYEKNVQMGMD-------------------------------IDVWNRTEIQLRDDRAHVVDDVLPLGEIVAGLLRNYI | |||||||||||||
7 | 4cijA | 0.13 | 0.09 | 3.20 | 1.91 | HHsearch | CVDWLQVTFKTGQDSVKK-C--VE--KLEKVFE--ILGLNEA--EFLPLKNGK---YGYKQGVA-FQGN-PVLAVYYDGA--D--DMGIHVEMTGCRLFE--LHT-SINWYE-------LFYRL-------VYEYEVNITRLDVAVDDFKGYF-KINTLVKKLKDDEVTRFKKAHIETIGHTLYFGAP----------SSDIQVRFYEKNVQMGMD-------------------------------IDVWNRTEIQLRDDRAHVVADVLPLGEIVAGLLRNY- | |||||||||||||
8 | 4cijA | 0.11 | 0.08 | 3.05 | 0.81 | SPARKS-K | CVDWLQVTFK--------TGQDSVKKCVEKLEKVFEILG-LNEAEFLPLKNG-------KYGYKQGVAFQGNPVLAVYYDGADDMGIHVEMTG------------------QGCRLFELHWYELFYRLVYEYE---VNITRLDVAVDDFKGYFK-INTLVKKLKDDHIENIVIEGGETIGHTLYFGAPSSD----------IQVRFYEKNVQAHVVAQIIADD---------VLPLGEIVAGLLRNYI--------QFRTRK-KRWPLARFWLNFLGDVQPLRI | |||||||||||||
9 | 4cwcA | 0.12 | 0.10 | 3.33 | 0.98 | FFAS-3D | -FDAMTIVGNLNKT---------------NAKKLSDF----------MSTEPQIRLWDILQTKFKAKALQEKVYIEYDKKADSWDRRNMRVEFNPNKL-----------THEEMLWLKQNIIDYM---------EDDGFTRLDLAFDFEDDLSDYYA-----MTDKAVKKTIFYGRNGKPETKYFGV----------RDSDRFIRIYNKKQERKDNARDMVDYWSSLEKVKDQAMIYMLTKNKYREMLKSISEIDL---TDLMKL-TLKENEKQLQKQIEFW-- | |||||||||||||
10 | 4cijA | 0.14 | 0.10 | 3.39 | 0.62 | HHpred | CVDWLQVTFKTGQDSVK---KCVE--KLEKVFE--ILGLNEA--EFLPLKNGKYGYKQG---VA-FQGN-PVLAVYYDG-A-DDMGIHVEMTGQGCRLFELHT--S-INWYE----LFY----------RLVYEYEVNITRLDVAVDDFKGY-FKINTLVKKLKDDEVTRFKARGGETIGHTLYFGAP---------SS-DIQVRFYEKNVQMGM-------------------------------DIDVWNRTEIQLRDDRAHVVADVLPLGEIVAGLLR--- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |