>PF05107 (268 residues) NRYEFVILFDVENGNPNGDPDAGNMPRIDAETGYGIVTDVCLKRKIRNYVEIVKEDCEGY KIYVKEGAVLNKQHETAYIGLGIDPKDEKAAKQNRDSLRDFMCKNFFDVRTFGAVMTTKV NCGQVRGPVQINFARSIDPIVPQEITITRMAVTTEKDAESKTTEMGRKHIIPYALYRTEG YVSANLAKKTTGFSEDDLDLLWESIINMFEHDHSAARGKMAVRKLIVFKHDSELGNAPAH KLFELINVKRKDSERPARSYSDYIVDID |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | NRYEFVILFDVENGNPNGDPDAGNMPRIDAETGYGIVTDVCLKRKIRNYVEIVKEDCEGYKIYVKEGAVLNKQHETAYIGLGIDPKDEKAAKQNRDSLRDFMCKNFFDVRTFGAVMTTKVNCGQVRGPVQINFARSIDPIVPQEITITRMAVTTEKDAESKTTEMGRKHIIPYALYRTEGYVSANLAKKTTGFSEDDLDLLWESIINMFEHDHSAARGKMAVRKLIVFKHDSELGNAPAHKLFELINVKRKDSERPARSYSDYIVDID | |||||||||||||||||||
1 | 4tvxF | 0.14 | 0.13 | 4.46 | 1.38 | HHsearch-2 | NFINIHVLISHSPSCLNRDD--MNMQKDAIFKRRVRISSQSLKRAMRKYYAQNIG-----ESSLRTIHL-AQLRDKTLALLSGKSVDKNLDKKLLKEDIRVNLQQGVDIALSGRMATSG-MMTEVDGAMSIAHAITTHQVDSDIDWFTAVDDLQE----QGSAHLGTQEF-SSGVFYRYANINLAQL-QENGASREQALEIATHVVHMLATEVTYAAFNPADMVMVNF-SDMPLSMAN--AFEKAVKAK-DGLQPSIQAFNQYWFSLS | |||||||||||||
2 | 3ps0A | 0.11 | 0.10 | 3.53 | 1.06 | Neff-PPAS | --ISGSVRFLVNLESLN---HRTAPVVLKTSTGVPVISGEALAHAYQASLVDIAKKEGLP--VGSLSSQYEFIKFSTDEALKIEGIKEPKDYNDARRFEVEVMLKDVIADVGGFMYAGGAP-VRRTSRIKLGYMIPALRGDEIPAQLEAQFHVVE---------------VSSALYTFSFELDEDLIAVPSTELERQKAKRVKSAIKALYSLLSGFLPSMKLMSLVVTKTDFPFMPEPIKTTIMRLGKAKGVLN--GNLAKAYVINNE | |||||||||||||
3 | 4tvxF | 0.14 | 0.13 | 4.45 | 1.47 | HHsearch | NFINIHVLISHSPSCLNRDD--MNMQKDAIFKRRVRISSQSLKRAMRKYYAQNIG-ESS----LRTIHLAQVIIDKTLALLSGKSVDKNLDKKLLKEDIAVNLQQGVDIALSGRMATSG-MMTEVDGAMSIAHAITTHQVDSDIDWFTAVDDLQE----QGSAHLGTQEF-SSGVFYRYANINLAQL-QENGASREQALEIATHVVHMLATERTYAAFNPADMVMV-NFSDMPLSMAN--AFEKAVKA--KDGQPSIQAFNQYWFSL- | |||||||||||||
4 | 3ps0A | 0.10 | 0.10 | 3.56 | 0.97 | SPARKS-K | ISGSVRFLVNLESLNHRTAPVVLKTSTGYLVRYVPVISGEALAHAYQASLVDIAKKEG-LPVLSSQYEFIKFSTDEALKIEGIKEPKDY---NDARRFEVEVMLKDVIADVGG-FMYAGGAPVRRTSRIKLGYMIPALRGDEIPAQLEAQFHVRIFNVEVSS-----------ALYTFSFELDEDLIVKGEEELERQKAKRVKSAIKALYSLLSGFLPSMKLMSLVVTKTDFPFMPEPIKTTIMRLGKAKGVLNGNLAKAYVINNEGI | |||||||||||||
5 | 5u07I | 0.14 | 0.11 | 3.84 | 0.97 | FFAS-3D | TFVDIHAIQTLPYSNINRD--DLGSPKTVVYGGRTRVSSQSWKRAVRHEVEARLGDATSVLFYLPV-----PAIDELAAIADEHRDAVAKEAAPADRITEVLKSRNVSVNLFGRMLA-ELPSTEVDGAVQFAHAFTVHGT------------------------------TSAGTFYRYANVNLDRLVENTG-DAQTARTAVAEFLRAFLSTVPSTLPD-----LVHIAVRFDRPISFAPAFETALYGSDGYTLRACQELNNY----- | |||||||||||||
6 | 4tvxF | 0.15 | 0.13 | 4.40 | 0.71 | HHpred | NFINIHVLISHSPSCLNRDD--MNMQKDFGGKRRVRISSQSLKRAMRKYYAQNIG---ESSL--RTIHLFDQIIDKTLALLSGKSVDKLDDKKLLKEDIAVNLQQGVDIALSGRMATSGMMTGKVDGAMSIAHAITTHQVDSDIDWFTAVDDLQ----EQGSAHLGTQEF-SSGVFYRYANINLAQL-QENGASREQALEIATHVVHMLATEPGAKQRTPAD-MVMVNFSDMPLSMAN--AFEKAVKAK------------------- | |||||||||||||
7 | 3ps0A | 0.13 | 0.12 | 4.13 | 0.85 | MUSTER | HHISGSVRFLVNLESLNHR--TAPV--VLKTSTGYLVRYVALAHAYQASLVDIAK-KEGLPVLSSQYEFIKFSTDEALKIEGI---KEPKDYNDARRFEVEVMLKDVIADVGG-FMYAGGAPVRRTSRIKLGYMIPALRGDEIPAQLEAQFHVRFSNVEVS-----------SALYTFSFELDEDL-VKGEEELERQKAKRVKSAIKALYSLLSGFLPSMKLMSLVVTKTDFPFMPEPIKTTIMRLGAKGVLNGN---LAKAYVINNE | |||||||||||||
8 | 5u07D | 0.16 | 0.10 | 3.37 | 0.97 | CNFpred | TFVDIHAIQTLPYSNINRDD--LGSPKTVVGKERTRVSSQSWKRAVRHEVEARLG--------------------------------------------------NVSVNLFGRMLAELPST-EVDGAVQFAHAFTVHGTTVEVDFFTAV-DDIPKENDHGSGHMNAG-QFSAGTFYRYANVNLDRLVENTGTARTAVAEFLRAFLSTVPS-ATAAMTLPDLVHIAVRFD-------------------------------------- | |||||||||||||
9 | 5u07I | 0.12 | 0.10 | 3.54 | 1.28 | HHsearch-2 | TFVDIHAIQTLPYSNINRDD--LGSPKTVVYKERTRVSSQSWKRAVRHEVEARL-----GDKAVRTRRIISEIDRQVVLSVGKKKSEAEHRDAILPADTEVLKSRNVSVNLFGRMLAEL-PSTEVDGAVQFAHAFTVHGTT------------------------------SAGTFYRYANVNLDRL-VENTGDAQTARTAVAEFLRAFLST---VPSTLPDLVHIAVRFDRPISFAP--AFETALYGSDVWPDDAIR----GYATVE | |||||||||||||
10 | 4regA | 0.10 | 0.09 | 3.41 | 0.79 | Neff-PPAS | --MYVRISGRIRNAHITKTKVTVRTENGWTVVEVPAITGNMLKHWHFVGFVDYFKTTPYGVNLTERALRYNGTRFGQGETTATKANGATVQLND----EATIIKELADADVHGFLAPKTG--RRRVSLVKASFILPTEDFI---------------------KEVEFSREYATGLYGFSIVLDLGLVGIPQGIDPNERKARIESALKALIPMLSGYVFKVEELVAIASEGPIALVHGFYEDYIEANRSIIKNARALGFNIEVFTYNVD | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |