>PF04890 (290 residues) LNSVTFTPTYSPSRVEKLSAVLDSYFYLQGKKTKVIDKSTELGLRFAVQHQGHSVPTTEK VLKVLSWIFIPIVIVAWILRQALHLYLHIAYPCVYLDTPLPEALQKDVFTTCQKISRTLN SSTILTMPEEKYQELKAEGISIEKPKGEFSTALPVRFYLDSRKSHTFYLLGQRDQFDTHC LDLYHLIQKGKNLISEFELTGKNDKKSIEKLLRTRLGIAAKITNLPNQNQQALYRGLKAE FYFDNYPSYVCSLEDNTISLHDVAGSYQDEFKEVDVARFVRNVLEARHLE |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | LNSVTFTPTYSPSRVEKLSAVLDSYFYLQGKKTKVIDKSTELGLRFAVQHQGHSVPTTEKVLKVLSWIFIPIVIVAWILRQALHLYLHIAYPCVYLDTPLPEALQKDVFTTCQKISRTLNSSTILTMPEEKYQELKAEGISIEKPKGEFSTALPVRFYLDSRKSHTFYLLGQRDQFDTHCLDLYHLIQKGKNLISEFELTGKNDKKSIEKLLRTRLGIAAKITNLPNQNQQALYRGLKAEFYFDNYPSYVCSLEDNTISLHDVAGSYQDEFKEVDVARFVRNVLEARHLE | |||||||||||||||||||
1 | 4r04A3 | 0.17 | 0.17 | 5.56 | 0.49 | SPARKS-K | IHNSIDDLIDEFNLLENVSDELYELKKLDEKSFEDISKNNSYSVRFINKSNGVYVETSEHITKEISTIKINTLNAAFFIQSLIDYSLSTSVKVLYLFSTGLNTISIQLVNLISNAVNTITEGIIVSTILDAIKELLDEGVLAFIAEDININTITGKYYVNTDKSIDFSISLVSNQVKVNGLYLNSVYSSYLDFVKNSDNTSNFMNLFLDNIFWKLFGTLVGKTNCDNNKNIDIYSSSKSTIFSGNGRNVVVEPIYNPDTISTSLDFSYEPLY--GIDRYINKVLIAPDLY | |||||||||||||
2 | 2d1lA | 0.13 | 0.10 | 3.59 | 0.64 | FFAS-3D | ----------HEAVIEKECSALGGLFQ-------------------TIISDKGSYPVWEDFINKAGKLQSQLRTTVVAAAAFLDAFQKVA------DATNTRGGTREIGSALTRCRHRS----IEAKLRQFSSALIDCLINPLQEQEEWKKVA-----NQLDKDHAKEYKKARQEIKKKSSDTLKLQKKAKKVDAQ---GRGDIQPQLDSALQD---VNDKYLLLEETEKQAVRKALIEE------RGRFCTFISLRPVIEEEISLGEIT-HLQTISEDLKSLTDPHKL- | |||||||||||||
3 | 3g5aB | 0.16 | 0.10 | 3.32 | 0.35 | HHpred | ---------------NLTSSYLQIADSIIAQAINLINETFPWSGEISFSYNGGKDCQ----------------VLLLLYLSCLWEYYITKLPTVFIDHDDTF---KTLENFIEETSLRYSLSLYESDRAEAFETFLQVF-----------------------PETKAIVIGIRHLLHWNLANIWSFLLYSN--EPICELYRY---------GFTSLGNV--EETLPNPH-------LRKDLHEDYYPGWY--LVDDKL-------------------------------- | |||||||||||||
4 | 5ifeC | 0.14 | 0.14 | 4.70 | 0.52 | MUSTER | LKAIYLIPLMDAEYANYYTREVMLILIFQSPDEEMKKIVLKV-VKQCCGTDGVEAEILPPFFKHFWQHRMARRNYRQLVDTTVELANKVGAAEIIIVDDLKEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQTTFGTVVNALGKRVYLNKSAKQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIG--MHKMTPPIKDLLPRLTP--ILKNRHEKV---QENCIDVGRIADRGAEYVSAREWMRICFELLELLKAH | |||||||||||||
5 | 2jg4A | 0.12 | 0.09 | 3.17 | 0.72 | CNFpred | -------------YLELLKDSLNEYAYAAEGLSYDLQNT-IYGMYLSVKGY---NDKQPILLKKIIEKMATFEIRFEIIKEAYMRSLNNFRAE---------QPHQHAMYYLRLLMTEV-----AWTKDELKEALD--DVTLP-RLKAFIPQLLSRLHI------EALLHGNIT-----KQAALGIM------------------QMVEDTLIEHAHTKPLLPSLVRYREVQLPDRGWFVYQQRNHNNCGIEIY---YQTDMQ------STSENMFLELFCQIISEPCFN | |||||||||||||
6 | 1vt4I | 0.19 | 0.18 | 5.90 | 0.76 | HHsearch-2 | RQPSMMTRMYNVSRLQPYLKLRQALLELRPAKNVLIDGVLDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPHSIQAELRRLLKSAWNAFNLSKILLTTRFKQVTDFLSAATTTHISLDHHSMTL-TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLIRDGLAT-------WDNWKHVNCDKLTTIIESSLNVLEPAEYRKIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEFD-SDDLIPPYLDQYFYSHIGHHLKNIEHPE-RMTLFRMVFLDFRFLE | |||||||||||||
7 | 6decM | 0.15 | 0.14 | 4.87 | 0.61 | Neff-PPAS | ---------HDQQRLEVIFADLARSWALYEDEGVIRCYLEELLHILTDADPEKKMCKRNEFESVLALVAYYQMEHRASLRLLLLKCFGAMCISTLVSSVLPVELARDMQTDTQDHQKLCYSALILAMGTPFAQFLLNIVEDGLPTTEQLPDLCLNLHLPAADQNVIMAALSKHANVKIFSEKLLLLLNRGDDPVRIFKHE-PQPPHSVLKFLQDVFGTVRHIADLSDKLRMEYLSLMHAIVRTTPYLQHRHRLPDLQAILRRILNEEETSPQCQMDRMIVREMCKEF--- | |||||||||||||
8 | 4nhbA | 0.15 | 0.09 | 3.02 | 0.54 | HHsearch | AMAMLETPMLFDN-LDHARRAMEGKTLIEKSGLRTLNA-FPLGFRHFYSKKPRVPPLYTNFAKECGISGQPMVPGADI--VSLKMYGHILVIHSLYKKSLPEQDQKWIEEAAKRSADD-VWAMVADGDEKAKATILANKGNIHEPSKHLVNAGKR-SWKLFY-----------DTV-PNAQAILDSADSYR--------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 5jubA | 0.11 | 0.10 | 3.58 | 0.45 | SP3 | LDGAELTVLPSLDRLSYIAKRLGSMTELDQDNITIPDEYYEMKNRLIKFPTYRNPDRIKSKLTLIEEVYEKFFLPEEELLTLDILENILSF---TSWEESPKVEEIY----EDLFEQVKRKRKFSTNDLLVIDYYFFHYGRKQYDKKLFERII--KRVLNQEIWT------DDVYNIVLFNDLMAIAAL---KIFHNSFSDTVVDKALAVIEKSQ-----------LYSYKPSVFVLKAKYELLHKENK-----KEAAENYDKAIVFASVLEDSVLEESIKAGKLADGLG | |||||||||||||
10 | 3tnfB | 0.08 | 0.07 | 2.81 | 0.84 | PROSPECTOR2 | L--------------DEYEQAIKRA-----------------------QENIKKGEELEKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTD---SEELSLSEINEKMEAFSKDSEKLTQLMEKHKGDEKTVQSLQREKGNPVSSLKDAHLAINKDQEVVEHEGQFYLLWDAIKNNPAALEKAQKDYSQSKHDLATIKM--EALIHKLSLEMEKQLETINNLIMSTDPKENEEATKLKDQQLFNLGGKFYPIHKEQKILWESIKDSPEKTIHKERVEETKQQLIANNISK | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |