>PF04877 (299 residues) MNMISNMPGLVAGNFSNFSIGSQSNSERPQNMDQVVDKLADMLKGSDLSSSPLGQMVKDK LDDSGGLMGILKKGGMENAVKDALKDIISEKLGDNFGAAQSFGLGNGSGTGGAGGAGGGQ QPDLLERVLSGLAKSSLDDLLGKQGEGTKFSNKDMPMLEEIAKFMDDPRSGIKPPDSGSW ANELKEDNYLNKEETAAFRAALDQVGGALDQKASGQPSGMPGGLGMPGNAGQNMLGGEGG LGGSGTGSAAGNPLQQLNDLIQGLQGLASQLSLQNLASSAMDTANALVGAMLPNNSRTA |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | MNMISNMPGLVAGNFSNFSIGSQSNSERPQNMDQVVDKLADMLKGSDLSSSPLGQMVKDKLDDSGGLMGILKKGGMENAVKDALKDIISEKLGDNFGAAQSFGLGNGSGTGGAGGAGGGQQPDLLERVLSGLAKSSLDDLLGKQGEGTKFSNKDMPMLEEIAKFMDDPRSGIKPPDSGSWANELKEDNYLNKEETAAFRAALDQVGGALDQKASGQPSGMPGGLGMPGNAGQNMLGGEGGLGGSGTGSAAGNPLQQLNDLIQGLQGLASQLSLQNLASSAMDTANALVGAMLPNNSRTA | |||||||||||||||||||
1 | 5ue0A | 0.10 | 0.08 | 3.11 | 0.80 | SPARKS-K | NEMAAIAMQGFRSMIEQFNVNNPATAKELQAMEAQLTAMSDQLVGADGELPAEIQAIKDALAQALKQ---------ADGLATAMGQVAFAAAV--GGGSAGTAGTVQMNVQAFSSTSSSSYAAALSDGYSAY---TLNSLYSESR------SGVQSAISQTANPALSRS--VSRSADQRAAETIVRDSQTL-GDVYSRLQVLDSLMSTIVSN----PQANQEEIMQLTASISKAPQSV------------DSLQKFAAQLEREFLAESQENAFRKQPAFIQQVLVNIASLFSGYL---- | |||||||||||||
2 | 4uosA | 0.14 | 0.08 | 2.86 | 0.80 | FFAS-3D | ----------------------------NEEVKKMLEKMIEEIKKMLEKAKKVKEMLEKMIKE---IKKMLENGEDSEKILKKAKEMAEKILKM--------------------------VIELAEKILKKA-KEMAEKILKKVKELGVDNEEVKKMLEKMIEEIK---------------KMLEK---AIKKVKEMLEKMIKEIKKMLE-----------------------------------NGEDSEKILKKAKEMAEKILKMVIELA-EKILKKAKEMAEKILKKV-------- | |||||||||||||
3 | 2j0oA | 0.14 | 0.11 | 3.67 | 0.39 | HHpred | -NIRTTNQ-ALKKEL----SQK---TLTKTSLEEIVNKSAQLLDILSRHEYPINKDARELLHSAPKEAELGDQMISHRELWAKIANSINDINEQYLK----------------------VYEHAVSSYTQDFSLSSLAGWISPGNDGVKLQV--NSLKKALEELKEKYKDLYPAN------------NTVSQEQANKWLTELGGTIGKVSQK--------NGGYVVPIDNMLKSLD---NLG-GNG--EVVLDNAKYQAWNAGF-SAEDETMKNNLQSNANSIFDNLVKVLSST----- | |||||||||||||
4 | 5ue0A | 0.14 | 0.12 | 4.03 | 0.69 | MUSTER | LDVDNEMAAIAMQGFRQFNVNNPATAKELQAMEAQLTAMSDQLVGADGELPAEIQAIKDALAQALKQ---------ADGLATAMGQVAFAAAVGGGSAGTAGTVQMNVQLYKTAFSSTSS-SSYAAALSDGYSAYTLNSLY------SESRSGVQSAISQTANPALSRS----VSRSADASQRAAETIVRDSQTLGDVYSRLQVLDSLMSTIVSNP---------------QANQEEIMQL--TASISKAPQSVDSLQKFAAQLEREFVERSLAESQENAFRKQPAFIQQVLVN---SG | |||||||||||||
5 | 4hb4C | 0.11 | 0.06 | 2.32 | 0.76 | CNFpred | -------------------------------LGHIYYNMLQLYR-------AVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYIS-----------------------KARNLDDVVKVLVEPLLNAVLEDYMNN-----VPDARDAEVLNCMTTVVEKVGHM--------IPQGVILI------LQSVFECTLDMINKDFTE---------------------------------------PEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVE | |||||||||||||
6 | 4jgwA3 | 0.09 | 0.02 | 0.88 | 0.44 | HHsearch-2 | -----------------------------------------------------------------------------------------------------------------------STPALFGLVADRLEA-----LESYP-PG-ELERTTGVAISVLSTWLASHPEDFGSEVK-GQLDRLESRTGYSADLIR---NLRAR----------------------------------------------------------------------------------------------- | |||||||||||||
7 | 5ue0A | 0.10 | 0.08 | 3.13 | 0.91 | Neff-PPAS | ------------------LLLDDVDNEMAAIAMQGFRSMIEQFNVNNPATAKELQAMEAQLTAMSDQLVGADGELEIQAIKDALAQALKQADGTAMGQVAFAAAVGGGSAGTAGAFSSTSSSSYAAALSDGYSAYTLNSLYSES------RSGVQSAISQTANPALSRSVSRSADASQRAAETIVRDS----QTLGDVYSRLQVLDSLMSTIVSNPQANQEEIMQLTASISKAPQ-------SVDSLQKFAAQLEREFVDGERSLAESQENAFRKQPAFIQQVLVNIASLFSGYL---- | |||||||||||||
8 | 5gupg | 0.13 | 0.04 | 1.50 | 0.61 | HHsearch | ----------------------------------------TMMSGRP-GRVPL------------------------------------QFLPNE-ARSL-P----------PPKLT--DP-RLVYMGFLGYCSGLIDNAIRRRPAGLKRDYMYALRDHDMFAYVKSHPEDFPEKDKKTYGEILEEHPVR------------------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 5ue0A | 0.10 | 0.09 | 3.24 | 0.60 | SP3 | LDDVDNEMAAIASMIEQFNVNNPATAKELQAMEAQLTAMSDQLVGADGELPAEIQAIKDALAQ---------ALKQADGLATAMGQVAFAAAVGGGSAGTAGTVQMNVQLYKTAFSSTSS-SSYAAALSDGYSAYTLNSLYSES------RSGVQSAISQTANPALSRSVSRSADASQRAAETIVRDSQ-TLGDVYSRLQVLDSLMSTIVSNPQANQE----------EIMQLTASISKAPQSVDSLQKFAAQLEREFVDGERSLAESQENAFRKQPAFIQQVLVNIASLFSGYL---- | |||||||||||||
10 | 5ue0A | 0.12 | 0.10 | 3.67 | 0.91 | PROSPECTOR2 | SLLLDDVDNEMAAIAEQFNVNNPATAKELQAMEAQLTAMSDQLVGADGELPAEIQAIKDALAQALKQA---------DGLATAMGQVAFAAAVGGGSAGTAGTVQMNVQKTAFSSTSSSSYAAALSDGYSAYTLNSLYS---------ESRSGVQSAISQTANPALSRS----VSRSADASQRAAETIVRDSQTLGDVYSRLQVLDSLMSTIVSNPQA-----------------NQEEIMQLTASISKAPQSVDSLQKFAAQLERRSLAESQENAFRKQPAFIQQVLVNIASLFSGYL | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |