>PF04790 (256 residues) VGIYGWRKRCLYFFVLLLMVTMIVNLALTIWILKVMKFSVDGMGNLRITNQGVRLEGKSE FLLPLYVKEIQSRKDSPLMLQSDRNVTVNARNNLGQITGQLTVGSHAVEAQGRRFEIKTE DGKKVLFSADENEISIGVEKLRVTGPEGAVFEQSVETPHVRAQPSQELKLESPTRALTME APKGVHIAADEGEIKATCRRDLQLQSTDGEIFLNAKTIRLGNIPQGSASTSSTPHQTVYE VCVCPNGKLFLSPGEA |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | VGIYGWRKRCLYFFVLLLMVTMIVNLALTIWILKVMKFSVDGMGNLRITNQGVRLEGKSEFLLPLYVKEIQSRKDSPLMLQSDRNVTVNARNNLGQITGQLTVGSHAVEAQGRRFEIKTEDGKKVLFSADENEISIGVEKLRVTGPEGAVFEQSVETPHVRAQPSQELKLESPTRALTMEAPKGVHIAADEGEIKATCRRDLQLQSTDGEIFLNAKTIRLGNIPQGSASTSSTPHQTVYEVCVCPNGKLFLSPGEA | |||||||||||||||||||
1 | 3jx8A | 0.09 | 0.07 | 2.82 | 0.97 | SPARKS-K | -----------------------DKRIDGNGNPETREIKISDYDEITFVGSAFEYEQSVTIDENLFDYLVTEVEGGTLKIYPKSINSYDLRPT--VYKIKSNSKEKELNTVGSG-SFIISKAGSGNVELR---GPVKGYKLECNAGSGNIIAKDIQLDSCSLASSGEIEVIGTVDRASFNVAGSGEIKAFDRKAECNIASEISVYATQIDANIVGSEIHYKGDPEISKSIGSGSINKVK----------------- | |||||||||||||
2 | 6mitC | 0.08 | 0.05 | 2.12 | 0.73 | FFAS-3D | ------KTRRWVIILLSLVALILI------GVNLDPTYKSDHSDTVVYSPE-----GALNY--RLIAQHVEYFSDDGISWFT--QPVMTTFDKDKVPTWSIKLTNDRMLYLYGHVEVNALTA-------DSQLRKITTDNAQINLVTQDVTS------------QDLVTLYGTTFNSS---GLRMRGNLRSKNAELIEKVRTSYEIQN------------------------------------------------ | |||||||||||||
3 | 3jx8A | 0.16 | 0.11 | 3.52 | 0.35 | HHpred | --------------------------------------------------DEITFVGSADF-------EYEQDKAPYLSVTIDEN--------L-FDYLVTEVEGGTLKI-------YPKSIKKYDLRPTVYKIKSELKELNTVGSGSFIISKP-----TKVNR--EIN--AGSGNVELRGGYKLECNAGSGNIIAKQLDNLSCSASSGEIEVIGTRIKAFDCQARKAE-CNIASSGEISVYATGSGEIHYKGD-- | |||||||||||||
4 | 3jx8A | 0.11 | 0.09 | 3.27 | 0.80 | MUSTER | KRIDGNGN--------------PETREIKI--YDEITFVGSA--DFEYEQSYLSVTIDENLFDYLVTEVEGGT----LKIYPKSI-NNSYDLRPTVYKIKSNSELKELNTVGSSFIISKPTKVNREINAGSGNVELRGYKLECNAGSGNIIAKDIQLDNLSCSLASSIEVIGTVDRASFNVAGSIKCQARKAECNIASSGEISVYAT-QILDANIVEIHYKGDPEISKSIGS--------------GSINKVK--- | |||||||||||||
5 | 3jx8A | 0.06 | 0.04 | 1.89 | 1.09 | CNFpred | ---------------------------------DEITFVG--SADFEYEQ-YLSVTIDENLFDYLVTEVE----GGTLKIYPKSSYDLRPT----VYKIKSNSK------ELKELNTVG----SGSFIIS-KPTKVNRMEINMAGSGNVELRGPVKGYKLECNMSGNIIAKDQLDNLSCSLAGEIEVIGTVDRASFNVAGEIKAFDCARKAECNIGEISVYA-------------TQILDANIVGSGEIHYKGDPE | |||||||||||||
6 | 1qiuA1 | 0.11 | 0.03 | 1.13 | 0.45 | HHsearch-2 | ------------------------------------------------------------------------------------------------------------------------------VSIKKSGLNFDNTAIAINAGKGLEFDT------------NTSESPDI-NPIKTKIGSGIDYNEN-GAMITKLGAGLSFDN-SGAITIG------------------------------------------ | |||||||||||||
7 | 4uj8A | 0.09 | 0.08 | 2.95 | 0.87 | Neff-PPAS | ------------------------------------NYQIKVLDDGKIDK----SATESPANNDVQLKVYAVDANGNIVGDITNDVTITSEDTNGVIVNASKSTANG-DTVYVITDNGSKKVGKETLTVKLGTVTLGTVDVEVIDTTLKATVVTKKADLIELDADNGDALAKLLANLDIKDQNGNPMVDSAEKLQALKSVLSGIVSSDTSVIGSVSNVDNLKDDASISGLAVKKAGTVTLTLVFIAPIAITVKAPA | |||||||||||||
8 | 3jx8A | 0.12 | 0.09 | 3.02 | 0.52 | HHsearch | -------------------------------------------------DK--RIDGNGNPETREI--KISDY--DEITFVGSADFEYEQDKAPYFDYLVTEVEGGTL-------KIYPKSIKKYDLRPTVYKIKSELKELNTVGSGSFIISKPTKV-----NR--EIN--AGSGNVELRGGYKLECNAGSGNIIAKQLDNLSCSASSGEIEVIGTEIKAFDCQANVGSGEYKGDPE-ISKS-IGSGSINKVK--- | |||||||||||||
9 | 2iwaA | 0.11 | 0.09 | 3.10 | 0.74 | SP3 | ----------------------------------------------RPSSRIVEVLNEFPHDPYAFTQGLVYAENDTLFESTYGRSSVRQVAQTGKVENIHKMDDSQVVWLKNIGFIYDRRTLSNIKNFTHQGLATDGKILYGSDGTSILYEIDPHTFKLIK------KHNVKYNGHRVIRLNELEYIN--GEVWANIWQTARISAKDGT-LLG--WILLPNLRKKLIDEGFRDIDVLNGIAWDQENKIFVTGKLW | |||||||||||||
10 | 3mbrX | 0.08 | 0.06 | 2.50 | 0.89 | PROSPECTOR2 | VPTQGYR------------------------VVKRYPHDTTAFTEGLFYLRGHLY--------------ESTGETGRSSVRETGRILQRAEVPPPYFGAGIVAWRDRLIQLTHEGFVYDLATLTPRARFRYPGLTSDDSHLYMSDGTAVIR--------KLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTARIDPASGKVVA---WIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLLTPLPH | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |