>PF04745 (289 residues) MFDPVPDLNLEAHIELGDVNIDITKSRVGESNSYISKSRRLFVHKTKDEERKLALRFFLP RIYFLSYKEVNYLFRCIDTIKDVHITKKNNIIVAPYMILLTLSSKGYKFTESMIELFFPE LYNENSKKFKFVSQICIIQEKLGYPVSHYHCYDFESYYSSLALSLRSDTSDVDIFDSRKE SEFITSLSEITYRFYTILLKSNSIQWSSSTGSVVNQMINTVLSTIHDIIISSDNTIKGID CKLATETKLPLTLLIDRITLFDRIITEIKSTNSFKISKRDKQTFLKYIT |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | MFDPVPDLNLEAHIELGDVNIDITKSRVGESNSYISKSRRLFVHKTKDEERKLALRFFLPRIYFLSYKEVNYLFRCIDTIKDVHITKKNNIIVAPYMILLTLSSKGYKFTESMIELFFPELYNENSKKFKFVSQICIIQEKLGYPVSHYHCYDFESYYSSLALSLRSDTSDVDIFDSRKESEFITSLSEITYRFYTILLKSNSIQWSSSTGSVVNQMINTVLSTIHDIIISSDNTIKGIDCKLATETKLPLTLLIDRITLFDRIITEIKSTNSFKISKRDKQTFLKYIT | |||||||||||||||||||
1 | 5cwpA | 0.06 | 0.04 | 1.92 | 0.54 | SPARKS-K | ----------------------------------------------------------MSSDEEEARELIERAKEAAERAQEAAERTGDP-------RVRELARELKRLAQEAAEEVKREALKLIVEAIEAAVRALEAAERTGDPEVRELARELVRLAVEAAEEVQRN---PSSSDVNEALKLIVEAIEAAVRALEAAERTG--------DPEVRELARELVRLAVEAAEEVQRNP---------SSEEVNEALKKIVKAIQEAVESLREAEESG-DPEKREKARERVR | |||||||||||||
2 | 3vibA | 0.12 | 0.08 | 2.80 | 0.76 | FFAS-3D | --------------------------------------------KTKEHLMLAALETFYRKGIATSLNEI---------AQAAGVTRD--------ALYWHFKNK-EDLFDALFQRICDDIENCIGSWTVFRHTLLHFFERL--------QSNDIHYKFHNILFLKCEHTEQNAAVIAIARKHQAIWREKITAVLTEAVENQDLADDLDKETAVIFIKSTLDGLIWRWFS--------------SGESFDLGKTAP--RIIGIMMDNLENHPCLR-------------- | |||||||||||||
3 | 2pffB | 0.14 | 0.12 | 4.15 | 0.49 | HHpred | -------FFIASQLQ---EQFNKILPEPTEFLGYVSSL--VEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL-VKTKELIKNYITARIMAKRPFDKKSNSALRAVGE--GNAQLVAYFEELRDLYQTLIKFSAETLSTLDAEKVFTQ-GLNILENTPDKDYLSIPISCPLIGV---IQLAHYVVTAKLLGFRSYLSQGTAIASFFVSVRKAITSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA---GKQVEIS------------ | |||||||||||||
4 | 2vj5A | 0.16 | 0.15 | 4.82 | 0.59 | MUSTER | MQERILDGEEDEINKIFDL-KRTLKDNLPLDRDFIDRLKRYF----KDSDQVLALRELLNEKD-LTAEQVELLTKIINEIISGS--EKS--VNAGINSAIQAKLFGNKMPQLLRACYRGFIMGNIS----TTDQYIEWLGNFGFN-------HRHTIVNFVEQSLIVDDSEKPSCNAYEFGFVLSKLIAIKMIRTSDVIFMKKLESSLKDGSLSAEQLLLTLLYIFQYPSESEQI-------LTSVIEVSRAS-HEDSVVYQTYLSSVNESDIFK-SESEREIAINILR | |||||||||||||
5 | 4anxA | 0.10 | 0.06 | 2.31 | 0.76 | CNFpred | -----------------------------------------------------AYPKLFSSVKWGQQEIVAKTYQLLARREVWDQ-----SALDVGLTMQLLD---CNFSDENVRAIAVQKLESL-EDDDVLHYLLQLVQAV-----KFEPYHD-SALARFLLKR------------------GLRNKRIGHFLFWFLRSE--IAQSRHYQQRFAVILEAYLRGCGTAMLHD------------------FTQQVQVIEMLQKVTLDIKSLSKYDVSSQVISQLKQKLE | |||||||||||||
6 | 2pffB | 0.15 | 0.15 | 5.00 | 0.92 | HHsearch-2 | -MDAYSTRPLTLHGSLEHVLLVPTASQQEQFNKILPEPTEGFADDEPTTPAELVGKFLEFENCYLEGNDIHALAAKLLQENDTTL-VKTKELIKNYITARIMAKRPFDKKSNSAL--FRAVGEGNQLVAYFEELRDLYQTLIKFSAETLSTLDAEKVFTQ-GLNILENTPDKDYLSIPISCPLIGVIQLAHYVVTAKLLRSYLTGHSQGLVTAVAEFFVSVRKAITFILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISKAPSGLDQSRIPFSE | |||||||||||||
7 | 2vj5A | 0.12 | 0.10 | 3.69 | 0.68 | Neff-PPAS | -QERILDGEEDEINHKIFDLKRTLKDNLPLDRDFIDRLKRYF----KDPSDQVLALRELLNEKDLTAEQVELLTKIINEIIS----GSEKSVNAGINSAIQAKLFGNKMPQLLRACYRGFIMGNIS----TTDQYIEWLGNFGFN-------HRHTIVNFVEQSLIPSCNAYEFGFVLSKLIAIKMIRTSDVIFMKKLESSSLLKDGSLSAEQLLLTLLYIFQYPSESEQILTSVIEVSRAS------------HEDSVVYQTYLSSVNESDIFK-SESEREIAINILR | |||||||||||||
8 | 1vt4I3 | 0.14 | 0.07 | 2.35 | 1.00 | HHsearch | ---------------------------------------------------------------------------------------------------------EYALHR------------------SIVDHYNIPK-TFD-SDDLIPPYLDQYFYSHIGHHLKNIE-HPERMT----------LFRMVFLDFRFLEQKIRHDSTAWSGSILNTLQQLYERLVNAILDFLPKIEENLICSK-----Y-TDLL--RIALMAEDEAIFEEAH-----KQVQRGGGGGG- | |||||||||||||
9 | 5ifeC | 0.09 | 0.09 | 3.42 | 0.59 | SP3 | LVDEQQKVRTISALAIAAL-AEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQH-RMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLADIDHKLEEQLIDGYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKS--AKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLG | |||||||||||||
10 | 5vchA3 | 0.10 | 0.09 | 3.50 | 0.91 | PROSPECTOR2 | KEGEYPKGVPSGSYDLSELRLFGPIIIDNGDSTHLGEHACQTILDASETELDVALDIYVALSTNLVGGFAQVFTTAKPVILQLCQSKSKNKRSFAVGALSEIALDENPFIQELLEALIISLTNDKSSSFDVSAIYSPVEKNLATEDDEATKEIVDRTFSNVCGCVARILKHQNLVPLEHTIPALFEEYDPIFKLFLKLFQEQNSTIINEAPKVI-AIFATVFEKESERIELETNSTLGREENLEKRKQFQSEEIKQ---QVIELLKHLNQQFNGAV--AQNPVLAQVIA | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |