>PF04682 (268 residues) SRCKIKHVTIDESKNQSFFFDKDAAIRAPAPCSPAPCSPAPGSPPPPAPPAAPAKPIIKC QLEPADEELARFTGYARIFHAISTHSPKIGSCGAASYNTVLIMTRSQNSLRVLPRDGSIT PRHNLFLKHVILKEMGLENSVQDFEVLYGDHLGPVTRQQAEEFRETVRGLRCKLEDCVFV LNSVCAAPFSKPVAAGSTGPHTLLLLEKYFLTFNPRDKANAINFGAAVTELIFGGVPFTK ILAFVQKFIEILTETPEDNMFKIYALLT |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | SRCKIKHVTIDESKNQSFFFDKDAAIRAPAPCSPAPCSPAPGSPPPPAPPAAPAKPIIKCQLEPADEELARFTGYARIFHAISTHSPKIGSCGAASYNTVLIMTRSQNSLRVLPRDGSITPRHNLFLKHVILKEMGLENSVQDFEVLYGDHLGPVTRQQAEEFRETVRGLRCKLEDCVFVLNSVCAAPFSKPVAAGSTGPHTLLLLEKYFLTFNPRDKANAINFGAAVTELIFGGVPFTKILAFVQKFIEILTETPEDNMFKIYALLT | |||||||||||||||||||
1 | 5ed7A | 0.11 | 0.08 | 3.00 | 0.59 | SPARKS-K | -----------------------------------PPGPTLRELWWVFYAADRALEEPRADSGLTREEVRAVRGFREQAWKLFGSAPR----------------------AFIGAALGLSPLQKLAVYYYIIHRESPFPALVRLVGRYTQRHGLYPRPDDPVLADAINGLFRDALAAGTTAEQLLMFDLPPKDVPVGS--DVQADSTALLRFIEGVISPEHVAYLGAFLSVLYAGRGRMSAATHTARLTDVDRLSAFDAAGYLDVLLT | |||||||||||||
2 | 5ed7A | 0.08 | 0.05 | 1.94 | 0.76 | FFAS-3D | -----------------------------------------------------------------TREEVRAVR--GFREQAWK-----------------LFGSAGAPRAFIGAALGLSPLQKLAVYYYIIHRERLVRLVGRYTQRHGLYVPRPDADAINGLFRDALAAGTTAEQLL-------MFDLLPPKDVPVGSDVQADSTALLRFIEGGVISPEHVAYLGAFLSVLYAGRGRMSAATHTARVGDVDRLSAFDR--------- | |||||||||||||
3 | 5ed7A | 0.11 | 0.07 | 2.55 | 0.37 | HHpred | ----------------------------------------------------------------------TLRELWWVFYAADRA---LEEPRAGFREQAWKLFGSAGAPRAFIGALGLSPLQKLAVYYYIIHRERRLSPFPALVRLHGLYVPRPDDPVNGLFRDALAAG-TTAEQLL-------MFDLLPPKDVPV-GSDLLRFIESQLAVPGGVISPEHVAYLGAFLSVLYAGRGRMSAATHTARLTGVTS--------------- | |||||||||||||
4 | 5ue0A | 0.12 | 0.12 | 4.18 | 0.69 | MUSTER | VDNEMAAIAMQGFRSMIEQFNVNNP--ATAKELQAMEAQLTAMSDQLVGADGELPAEIQAIKDALAQALKQADGLATAMGQVAFAAAVGG-GSAGTAGTVQMNVQLYKTAFSSTSSSSYAAALSDGYSAYTLNSL-VQSAISQTANPALSRSVSRSADASQRAAETIVRDSQTLGDVYSRLQVLDSL-MSTIVSNPQANQEEIMQLTASISK-APQSVDSLQKFAAQLEREFVDG---ERSLAESQENA--FRKQPAQVLVNIASLFS | |||||||||||||
5 | 4gmxC | 0.11 | 0.07 | 2.45 | 0.73 | CNFpred | --------------------------------------------------------------------RTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAV-----LEDYMNNPDARDAEVLNCMTTVVEKVGVILILQSVFECTLDMIN--YPEHRVEFYKLLKVINEKSFAAFLEL----------------PPAAFKLFVDAICWAFKHNVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIF-------VSETFFVLT | |||||||||||||
6 | 2pffB | 0.13 | 0.12 | 4.12 | 0.65 | HHsearch-2 | ----------------------MDAYSTRPLTLSHGSLEHVLLVPTASQLQEQFNKILPEPTEGFDDEPTTPAELVGKFLGYVSSLV--EPSKVGQFDQVLNLCEFENCYLEGNENDTTLVKTKELIKNYITARIMAKVELRDLYQTYHVLV----GDLIKFSAETLSELIRTTLDFTQGLNILEWLEPDKDYLLSISCPLGVIQLAHYLLGFTPGSFFVSVRKAITVLFFICYSLTQEQVVNKTNSHLPAGKQVEAKNLVSLYGLNL | |||||||||||||
7 | 5ue0A | 0.11 | 0.10 | 3.78 | 0.82 | Neff-PPAS | --NEMAAIAMQGFRSMIEQFNNPATAKELQAMEAQLTAMSDQLVGADGELPAEIQAIKDALAQALKQADGLATAMGQVAFAAAVGGGSAGTAGTVQYKTAFSSTSSSSYAAALSDGYSAYTLNSLYSES----RSGVQSAISQTANPALSRSVSRSADASQRAAETIVRDSQTLGDVYSRLQVLDSLMSTIVSNPQANQEEIMQLTASISKA--PQSVDSLQKFAAQLEREFVDG--ERSLAESQENAFRKQPAFIQQVLVNIASLFS | |||||||||||||
8 | 1vt4I3 | 0.14 | 0.08 | 2.80 | 0.84 | HHsearch | ------------------------------------------------------------------------------EYAL-------H----RSIVDHYNIPKTFDSDDLIP-PYLDQYF-----YSHIGHH--LKNIPERMTLFRMVF---------LDFRFLEQKIRHDSTASGSILNTLQQLKFYKPYICDN-DPKYERLVNA-ILDFLPKIEENLICSKTDLLRIALMAEDEAIFEEAHKQ---VQRGGGGGGGGGGGGGG- | |||||||||||||
9 | 3pjrA | 0.10 | 0.09 | 3.36 | 0.57 | SP3 | DIQNILSFERDYPNAKVILLETKRILQAANEVIEHNVNRKPKRIWTENPEGKPIL------YYEAMNEADEAQFVAGRIREAVERG-------ERRYRDFAVLYRTNAQSRVMVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTIDKLVRYAADHELSLFEA---LGELEMIGLGAKAAGALAARSQLEQWTQLQEYVSVTELVEEVLDKSGYREMLKAERTLDEFLSVTKHFENVSDDKSLIAFLTDLALIS | |||||||||||||
10 | 4dtdA | 0.09 | 0.09 | 3.51 | 1.00 | PROSPECTOR2 | TKATLAGLVVAPANSAYVKSAQGDALFLTKDNQGSYQRPPSLQDGKNYQNWQTHTVELVSYPCEDDKAAVETRKATHFTTHIDQSNHQPLAPIQSEDGRFVIEITNAKHVIAAGNGISAEAAKGFELRLLESAPWYQKSLKSQFASL-TSAENLDDKELAANVFAYLTSIYLKAKKFGIYINEWDPSEQITPNANGLTDPKVKNAWESKIVEILSKSDAKAVKHIKPQLQSRYSESLSKNVFQYFQDGGEVAGHGINNATVPELAILT | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |