>PF04674 (278 residues) QYHKGPLLTGKISVNLIWYGKFKPSQRAIITDFITSLSSPIKPTTASQPSVATWWKSTEK YYQLTNNKKSVNLALSLGSQILDEKYSLGKSLTTNQILNLASKGQQQNAINVVLTAADVL VDGFCSSRCGTHGSSYGARVNGKRNKFAYIWVGNSETQCAGQCAWPFHQPIYGPQSAPLV APNNDVGLDGMVINVASLLAGTVTNPFGNGYFQGPKEAPLEAASACTGVYAKGAYPGYAG DLLLDKTSGASYNANGDNGRKYLLPAIVDPKTSACSTL |
![]() | |
|
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | QYHKGPLLTGKISVNLIWYGKFKPSQRAIITDFITSLSSPIKPTTASQPSVATWWKSTEKYYQLTNNKKSVNLALSLGSQILDEKYSLGKSLTTNQILNLASKGQQQNAINVVLTAADVLVDGFCSSRCGTHGSSYGARVNGKRNKFAYIWVGNSETQCAGQCAWPFHQPIYGPQSAPLVAPNNDVGLDGMVINVASLLAGTVTNPFGNGYFQGPKEAPLEAASACTGVYAKGAYPGYAGDLLLDKTSGASYNANGDNGRKYLLPAIVDPKTSACSTL | |||||||||||||||||||
1 | 5i1vA | 0.11 | 0.09 | 3.10 | 0.65 | SPARKS-K | LLECFHRSAGHLAMHAQIPVDVPD-AEERMSWFLAELNEGVAVAPSLTRRRLPWLATSQLLAIPDVGPGAIGVRRKVKSADLR------GPHTREQLAAAYRHLHCPSAAMEYIAYNTVDPAATAVPR---------------GASLKTFYMVAWT----------------------------DPDEDEEHLRWIREIYRDIH--SATGGVPTPDEVNTGA------------YINYPDIDLADPEWNTSGVPWHTIYYGDNYPRLQEIKSRWDPRN | |||||||||||||
2 | 2x7mA | 0.14 | 0.08 | 2.71 | 0.56 | FFAS-3D | --------GSHMKLCLVAFDGRIPMLSSIVDRFEEHV--------------SEYL----------GEVKVKKKRAKLPEHAYSKVR---GQYLARALLDTLRGMKGEYDRVLGLTSEDLYAPGLNFVF----------GQARCPGREAVVSV------------------------ARLLDPDPELYLERVVKELTHELGHTFLGHCPDRNCVMSFSSSLLEVDRCR--------------------------------------------------- | |||||||||||||
3 | 2xsaA1 | 0.11 | 0.05 | 1.93 | 0.30 | HHpred | ------------GVIEGFYGRWRRDERATVMDWIAAAGMNTYYGPKDDVHVRARWRRLTELRDA-----AAARGMVFYVS-----LAPCLDVDPQDRAALLARVDRAGLRNLVLLFDDIPSVLPE----------------------------------AD--RH------------RF----DS--FAEAQADLSNMVLRHLRGAGH---------------------------------------------------------------------- | |||||||||||||
4 | 5gwyB | 0.14 | 0.13 | 4.53 | 0.66 | MUSTER | QPSG-RVCYGSTVLNGVWLGDTVTCPRHVIAP-----STTVLIDYDHAYSTMRLHNFSVSHNGVFLGVVGVTSVLRIKVSQSNVHHVFKTLKPGDSFNILACYEGIASGVFGVNLRTNFTIKGFINGACG-----SPGYNVRNDGTVEFCYLHQIELGSGAHVGSDFTGSVYGNQPSLQVESANLMLSDNVVAFLYAALLN------GCRWWLCSTRVNVDGFNEWAMANGYTSVSSVECYSILAAKTGVSVEQEGFGGKNILLCDEFTLAEMYGVNL | |||||||||||||
5 | 1jdnA | 0.05 | 0.04 | 1.90 | 0.83 | CNFpred | -----------SRAALVYSDDLERNCYFTLEGVHEVFQLHTSIYSFDETKDLDLEDIVRNIQA--------SERVVIMCA------------SSDTIRSIMLVAHMTSGDYAFFNIELFNSSSYGDG--SWKRGDKHDFEAKQAYSSLQTVTLLRTKPEFEKFSMEVKSSVEKQGLNMEDYVNMFEGFHDAILLYVLALHEVLR---------YSKKDGGKIIQQTW----NRTFEGIAGQVSIDADRYGDFSVIAMTDGTQEVIGDYFGKEGRFEMR | |||||||||||||
6 | 6ouaI | 0.12 | 0.09 | 3.32 | 0.35 | HHsearch-2 | KYLKLD----ELTLKKVCGELISGLGLTLLHDMQSLLTLDIFNNATSNMAFISSLDILTQLSKQKSD-YAIQYLI-V----------------------------GPDIMNKVFSSDDPLLSAACRYLVATKNKLMQYPQNQYMDLTNYLYRNKVLSS-KSLFGVSFFKQINDFKNAKFFTITGIPALSYICIIILRRLETAE---NTKIKFSGIINVHHDEIGQHGWIKGVNNIHDLRVKILMHLSN----TANPYRDAAFL--------------- | |||||||||||||
7 | 4gpaA | 0.08 | 0.07 | 2.75 | 0.78 | Neff-PPAS | ----FPTEGESQFVLQL-----RPSLRGALLSLLDHYEWNCFVFLYDTDRGYSILQAIMEKAGQNG--------WHVSAICVE-------NFNDVSYRQLLEELDRRQEKKFVIDCVGKHVKGYHYIIANLGFKDISLERFIHGGNVTGFQLVDFNTPMVTKLMDRWKKLDQREYPGSETPPK---YTSALTYDGVLVMAETFRSRGNAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDHYVNYTMDVFELKSTGPRKVGYWNDMDKLVLIQ | |||||||||||||
8 | 3cqbA | 0.12 | 0.04 | 1.28 | 0.34 | HHsearch | ----------------------------------------------------------------------------NASKGAL--RSVGGVIEEHWLLETVGRQAIGPTVAIYD-SA--DINAFATGA----------------K-DSLVAVSTGL----------------------LH----N-TRDEAEAVLAHEVSHIANGDV---TTLQ---------------------------------------------------------------- | |||||||||||||
9 | 5n8oA | 0.11 | 0.10 | 3.66 | 0.69 | SP3 | V-----LAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAAD-RRSQMNLKQDERLSGELITGRRQLLEGMAFTPGSTDQGEKLSLKETLTLLDGAARHNVQVLITDSGQRTGTGSALMAMKDAGVNTYRWQGGEQRPATIISEPDRNVR-YARLAGDFAASVKAGEESVAQVS-GVREQAILTQAIRSELKTQVTMTALSPVWLDSRSRYL------RDMYRPGQWNPETRSDRVTAQSH-SLTLRDAQGETQVVRSSWSLFRPE--KM | |||||||||||||
10 | 1p9sA | 0.13 | 0.12 | 4.01 | 0.91 | PROSPECTOR2 | AGLRKAQPSGNTVLNGLWLGDIVYCPRHVI-----------ASNTTSAIDYDHEYSIRLHNFGVVGATHGVTLKIKVSQTNHTPRHSFRTLKSGEGFNILACYDGCAQGVFGVNRTNWTIRGSFINGACGSPGYNLKNG---------EVEFVYHQIELGSGSSSFDGVYGGFEDQPNLQVESANQLTVNVVAFLYAAIL------NGCTWWLKGEKLFVEHYNEWAQANGFTANGEDAFSILAAKTGVCVERLNGFGGKQILGYSSLNDEFSQFGVN | |||||||||||||
|
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |